Annotation Detail for RHOD

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Basic Information Top

Gene Symbol:	RHOD ( ARHD,RHOHP1,RHOM,Rho )
Gene Full Name:	ras homolog gene family, member D
Band:	11q13.2
Quick Links	Entrez ID:29984; OMIM: 605781; Uniprot ID:RHOD_HUMAN; ENSEMBL ID: ENSG00000173156; HGNC ID: 670
Relate to Another Database:	SFARIGene; denovo-db

General

Expression

Regulation

Pathways, Diseases and Drugs

PTM

TF binding site

miRNA targets

Cis-NATs

Post Translation Modification

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PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:2 results
Predicted PTM Sites by profile HMM from dbPTM:4 results

Location(AA)	Modification
54	Effector region (Potential).
207	Cysteine methyl ester (By similarity).

Location(AA)	Modifications	Resource
207	Cysteine methyl ester (By similarity).	Swiss-Prot 53.0
207	S-geranylgeranyl cysteine (Bysimilarity).	Swiss-Prot 53.0

Location(AA)	Modification	Resource
78	Phosphotyrosine(EGFR)	HMM predict
78	Phosphotyrosine(Syk)	HMM predict
100	Phosphoserine(MAPK)	HMM predict
197	Asparagine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_014578
Location:chr11 66580896-66596058
strand:+

Upstream the gene:19 results
Downstream the gene:17 results
Inside the gene:11 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	66577839	66579537	1698	2209
CTCF	CD4	GSE12889	66577979	66578240	261	2787
CTCF	CD4	SISSRdata	66577979	66578240	261	2787
CTCF	Hela	GSE12889	66577878	66578283	405	2816
FOXA1	MCF7	GSE15244	66577881	66578766	885	2573
FOXA1	MCF7	GSE15244	66579144	66579354	210	1648
NRSF	pAb	Jurkat	66579144	66579526	382	1562
P300	T30-glioblastoma	GSE21026	66577889	66579611	1722	2147
RARA	MCF7	GSE15244	66577881	66578229	348	2842
RARA	MCF7	GSE15244	66578513	66578766	253	2257
RARA	MCF7	GSE15244	66579671	66579989	318	1067
RARG	MCF7	GSE15244	66579784	66580426	642	792
TFAP2C	MCF7	GSE21234	66577694	66580347	2653	1876
hScc1	Bcell	GSE12603	66577881	66578442	561	2735
hScc1	CdLS	GSE12603	66577881	66578442	561	2735
hScc1	G2	GSE9613	66577881	66578442	561	2735
p130	Senescent	GSE19898	66579408	66579731	323	1327
p130	shRbQuiescent	GSE19898	66579997	66580523	526	637
p130	shRbSenescent	GSE19898	66579993	66580360	367	720

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	66605582	66605858	276	9662
CTCF	CD4	SISSRdata	66605582	66605858	276	9662
CTCF	Jurkat	GSE12889	66605585	66605775	190	9622
FoxA1	MCF7	MACSdata	66614824	66615042	218	18875
Myc	K562	GSE19551	66612978	66613395	417	17128
NRSF	Jurkat	SISSRdata	66605590	66605760	170	9617
NRSF	pAb	Jurkat	66605641	66605807	166	9666
Oct1	Hela	GSE14283	66599380	66599458	78	3361
RARA	MCF7	GSE15244	66602768	66602900	132	6776
RARG	MCF7	GSE15244	66602683	66602900	217	6733
TAF	Hela	GSE8489	66597370	66597614	244	1434
TFAP2C	MCF7	GSE21234	66601879	66603042	1163	6402
TFAP2C	MCF7	GSE21234	66605559	66606674	1115	10058
USF1	HepG2	E	66599994	66600752	758	4315
hScc1	Bcell	GSE12603	66605641	66606481	840	10003
hScc1	CdLS	GSE12603	66605641	66606481	840	10003
hScc1	G2	GSE9613	66605641	66606236	595	9880

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	66595821	66596109	288
CTCF	CD4	SISSRdata	66595821	66596109	288
ER	MCF7	GSE19013	66585972	66586774	802
RARA	MCF7	GSE15244	66584454	66584864	410
Rb	Growing	GSE19898	66594105	66594292	187
TFAP2C	MCF7	GSE21234	66586070	66587318	1248
hScc1	Bcell	GSE12603	66580658	66581223	565
hScc1	Bcell	GSE12603	66581819	66582006	187
hScc1	Bcell	GSE12603	66595542	66596052	510
hScc1	CdLS	GSE12603	66595654	66596052	398
p130	Senescent	GSE19898	66594520	66594709	189

Validated miRNA targets

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miR Walk:64 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	18034880
hsa-miR-1	hsa-mir-1-1	20	18034880
hsa-miR-1	hsa-mir-1-2	18	18034880
hsa-miR-1	hsa-mir-1-1	20	18034880
hsa-miR-10b	hsa-mir-10b	2	20843787
hsa-miR-10b	hsa-mir-10b	2	20843787
hsa-miR-10b*	hsa-mir-10b	2	20843787
hsa-miR-10b*	hsa-mir-10b	2	20843787
hsa-miR-124	hsa-mir-124-1	8	18619591
hsa-miR-124	hsa-mir-124-2	8	18619591
hsa-miR-124	hsa-mir-124-3	20	18619591
hsa-miR-124	hsa-mir-124-1	8	18619591
hsa-miR-124	hsa-mir-124-2	8	18619591
hsa-miR-124	hsa-mir-124-3	20	18619591
hsa-miR-133a	hsa-mir-133a-1	18	18034880
hsa-miR-133a	hsa-mir-133a-2	20	18034880
hsa-miR-133a	hsa-mir-133a-1	18	18034880
hsa-miR-133a	hsa-mir-133a-2	20	18034880
hsa-miR-133b	hsa-mir-133b	6	18034880
hsa-miR-133b	hsa-mir-133b	6	18034880
hsa-miR-138	hsa-mir-138-2	16	21079996
hsa-miR-138	hsa-mir-138-1	3	21079996
hsa-miR-138	hsa-mir-138-2	16	20232393
hsa-miR-138	hsa-mir-138-1	3	20232393
hsa-miR-138	hsa-mir-138-2	16	21079996
hsa-miR-138	hsa-mir-138-1	3	21079996
hsa-miR-138	hsa-mir-138-2	16	20232393
hsa-miR-138	hsa-mir-138-1	3	20232393
hsa-miR-138-1*	hsa-mir-138-1	3	21079996
hsa-miR-138-1*	hsa-mir-138-1	3	21079996
hsa-miR-138-2*	hsa-mir-138-2	16	21079996
hsa-miR-138-2*	hsa-mir-138-2	16	21079996
hsa-miR-139-3p	hsa-mir-139	11	20951699
hsa-miR-139-3p	hsa-mir-139	11	20951699
hsa-miR-139-5p	hsa-mir-139	11	20951699
hsa-miR-139-5p	hsa-mir-139	11	20951699
hsa-miR-141	hsa-mir-141	12	20967756
hsa-miR-141	hsa-mir-141	12	20967756
hsa-miR-141*	hsa-mir-141	12	20967756
hsa-miR-141*	hsa-mir-141	12	20967756
hsa-miR-151-3p	hsa-mir-151	8	20812359
hsa-miR-151-3p	hsa-mir-151	8	20305651
hsa-miR-151-3p	hsa-mir-151	8	20812359
hsa-miR-151-3p	hsa-mir-151	8	20305651
hsa-miR-151-5p	hsa-mir-151	8	20812359
hsa-miR-151-5p	hsa-mir-151	8	20305651
hsa-miR-151-5p	hsa-mir-151	8	20812359
hsa-miR-151-5p	hsa-mir-151	8	20305651
hsa-miR-183	hsa-mir-183	7	18034880
hsa-miR-183	hsa-mir-183	7	18034880
hsa-miR-183*	hsa-mir-183	7	18034880
hsa-miR-183*	hsa-mir-183	7	18034880
hsa-miR-29c	hsa-mir-29c	1	21310958
hsa-miR-29c	hsa-mir-29c	1	21310958
hsa-miR-29c*	hsa-mir-29c	1	21310958
hsa-miR-29c*	hsa-mir-29c	1	21310958
hsa-miR-376a	hsa-mir-376a-1	0	18034880
hsa-miR-376a	hsa-mir-376a-2	0	18034880
hsa-miR-376a	hsa-mir-376a-1	0	18034880
hsa-miR-376a	hsa-mir-376a-2	0	18034880
hsa-miR-96	hsa-mir-96	7	18034880
hsa-miR-96	hsa-mir-96	7	18034880
hsa-miR-96*	hsa-mir-96	7	18034880
hsa-miR-96*	hsa-mir-96	7	18034880

Cis-Nats regulation

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Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

AutismKB 2.0

Annotation Detail for RHOD

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics