Annotation Detail for HIST1H2BD
Basic Information Top
| Gene Symbol: | HIST1H2BD ( H2B.1B,H2B/b,H2BFB,HIRIP2,MGC90432,dJ221C16.6 ) |
|---|---|
| Gene Full Name: | histone cluster 1, H2bd |
| Band: | 6p22.2 |
| Quick Links | Entrez ID:3017; OMIM: 602799; Uniprot ID:H2B1D_HUMAN; ENSEMBL ID: ENSG00000158373; HGNC ID: 4747 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 6 | N6-acetyllysine. | |
| 12 | N6-acetyllysine. | |
| 13 | N6-acetyllysine. | |
| 15 | Phosphoserine; by STK4. | |
| 16 | N6-acetyllysine. | |
| 17 | N6-acetyllysine. | |
| 21 | N6-acetyllysine. | |
| 24 | N6-acetyllysine. | |
| 47 | N6-methyllysine. | |
| 58 | N6,N6-dimethyllysine. | |
| 109 | N6-acetyllysine; alternate. | |
| 109 | N6-methyllysine; alternate. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 6 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 12 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 13 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 15 | Phosphoserine (by STK4). | Swiss-Prot 53.0 |
| 16 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 17 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 21 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 24 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 47 | N6-methyllysine. | Swiss-Prot 53.0 |
| 58 | N6,N6-dimethyllysine. | Swiss-Prot 53.0 |
| 109 | N6-acetyllysine; alternate. | Swiss-Prot 53.0 |
| 109 | N6-methyllysine; alternate. | Swiss-Prot 53.0 |
| 121 | Glycyl lysine isopeptide (Lys-Gly)(interchain with G-Cter in ubiquitin). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 15 | Phosphoserine(PKA) | HMM predict |
| 33 | Phosphoserine(PKA) | HMM predict |
| 33 | Phosphoserine(PKC) | HMM predict |
| 33 | Phosphoserine(PKG) | HMM predict |
| 37 | Phosphoserine(PKA) | HMM predict |
| 37 | Phosphoserine(PKC) | HMM predict |
| 37 | Phosphoserine(PKG) | HMM predict |
| 38 | Phosphotyrosine(PKG) | HMM predict |
- RefSeq ID: NM_021063
- Location:chr6 26266327-26266847
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 26265734 | 26266831 | 1097 | 45 |
| NRSF | mAb | Jurkat | 26264964 | 26267151 | 2187 | 270 |
| Pol2 | GM12878 | GSE19551 | 26264217 | 26267437 | 3220 | 501 |
| RARA | MCF7 | GSE15244 | 26264850 | 26266940 | 2090 | 433 |
| RARG | MCF7 | GSE15244 | 26265734 | 26266866 | 1132 | 28 |
| USF2 | HepG2 | E | 26265333 | 26267077 | 1744 | 123 |
| VDR | GM10855-Unstim | GSE22484 | 26263617 | 26268983 | 5366 | 28 |
| VDR | GM10855-stim | GSE22484 | 26263048 | 26268956 | 5908 | 326 |
| VDR | GM10861-Unstim | GSE22484 | 26263229 | 26268883 | 5654 | 272 |
| VDR | GM10861-stim | GSE22484 | 26263322 | 26268959 | 5637 | 187 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K4me3 | colorectal | cancer | 26266362 | 26267151 | 789 | 0 |
| LIN9 | G0 | GSE7516 | 26266327 | 26266866 | 539 | 0 |
| PHF8 | 293T | GSE20725 | 26266085 | 26267081 | 996 | 0 |
| TAF | k562 | GSE8489 | 26265074 | 26268358 | 3284 | 0 |
| p130 | G0 | GSE7516 | 26266327 | 26266902 | 575 | 0 |
Validated miRNA targets