Annotation Detail for HLA-A

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Basic Information Top

Gene Symbol:	HLA-A ( FLJ26655,HLAA )
Gene Full Name:	major histocompatibility complex, class I, A
Band:	6p22.1
Quick Links	Entrez ID:3105; OMIM: 142800; Uniprot ID:1A03_HUMAN; ENSEMBL ID: ENSG00000206503; HGNC ID: 4931
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
110	N-linked (GlcNAc...) (By similarity).

Location(AA)	Modifications	Resource
110	N-linked (GlcNAc...) (By similarity).	Swiss-Prot 53.0

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	30002896	30003060	164	15332
CTCF	CD4	SISSRdata	30002896	30003060	164	15332
CTCF	G2	GSE9613	30002538	30003399	861	15341
CTCF	G2	GSE9613	30004006	30004139	133	14237
H3ac	HepG2	E	30016639	30018265	1626	858
NFkBII	GM10847	GSE19485	30001699	30003434	1735	15743
NFkBII	GM10847	GSE19485	30017364	30018893	1529	181
NFkBII	GM12878	GSE19485	30017144	30018901	1757	287
NFkBII	GM12892	GSE19485	30017202	30018922	1720	248
NFkBII	GM15510	GSE19485	30017344	30018942	1598	167
NFkBII	GM18505	GSE19485	30001684	30003423	1739	15756
NFkBII	GM18505	GSE19485	30017396	30018835	1439	194
NFkBII	GM18526	GSE19485	30017396	30018830	1434	197
Oct1	H2O2-Hela	GSE14283	30015504	30015531	27	2792
Oct1	Hela	GSE14283	30000499	30000528	29	17796
PHF8	293T	GSE20725	30017863	30018721	858	18
Rb	Growing	GSE19898	30002552	30002691	139	15688
TAFII	hES	GSE17917	30018104	30018425	321	45
hScc1	Bcell	GSE12603	30002414	30003224	810	15491
p130	Quiescent	GSE19898	30002341	30002760	419	15759
p130	Senescent	GSE19898	30002518	30002886	368	15608
p130	Senescent	GSE19898	30017906	30018198	292	258
p130	Senescent	GSE19898	30018208	30018340	132	36
p130	shRbQuiescent	GSE19898	30002176	30002902	726	15771
p130	shRbQuiescent	GSE19898	30002994	30003465	471	15080
p130	shRbSenescent	GSE19898	30002472	30002803	331	15672

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	30024302	30024373	71	2706

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	30018083	30018740	657
CTCF	G2	GSE9613	30020316	30020465	149
PHF8	HeLa	GSE20725	30017782	30018876	1094
Pol2	GM12878	GSE19551	30017746	30019194	1448
hScc1	Bcell	GSE12603	30018155	30018934	779
p130	shRbSenescent	GSE19898	30018220	30018430	210

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-146a	hsa-mir-146a	5	19187610
hsa-miR-146a*	hsa-mir-146a	5	19187610
hsa-miR-15a	hsa-mir-15a	13	19187610
hsa-miR-15a*	hsa-mir-15a	13	19187610
hsa-miR-181a	hsa-mir-181a-2	9	19187610
hsa-miR-181a	hsa-mir-181a-1	1	19187610
hsa-miR-181b	hsa-mir-181b-1	1	19187610
hsa-miR-181b	hsa-mir-181b-2	9	19187610
hsa-miR-200b	hsa-mir-200b	1	19187610
hsa-miR-200b*	hsa-mir-200b	1	19187610

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018