Annotation Detail for HLA-DPB1

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Basic Information Top

Gene Symbol:	HLA-DPB1 ( DPB1,HLA-DP1B )
Gene Full Name:	major histocompatibility complex, class II, DP beta 1
Band:	6p21.32
Quick Links	Entrez ID:3115; OMIM: 142858; Uniprot ID:DPB1_HUMAN; ENSEMBL ID: ENSG00000223865; HGNC ID: 4940
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
48	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_002121
Location:chr6 33151737-33162953
strand:+

Upstream the gene:1 results
Downstream the gene:9 results
Inside the gene:9 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	33151437	33151893	456	73

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	33167805	33168101	296	5000
CTCF	CD4	SISSRdata	33167805	33168101	296	5000
CTCF	G2	GSE9613	33167561	33168230	669	4942
CTCF	G2	GSE9613	33168764	33168974	210	5916
CTCF	G2	GSE9613	33179426	33179681	255	16600
CTCF	G2	GSE9613	33182361	33182727	366	19591
Myc	K562	GSE19551	33167813	33168089	276	4998
hScc1	Bcell	GSE12603	33167705	33168195	490	4997
hScc1	CdLS	GSE12603	33167634	33168135	501	4931

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	33158548	33158829	281	0
CTCF	CD4	SISSRdata	33158548	33158829	281	0
CTCF	G2	GSE9613	33153763	33154007	244	0
CTCF	G2	GSE9613	33156007	33156211	204	0
CTCF	G2	GSE9613	33156553	33156934	381	0
CTCF	G2	GSE9613	33158179	33158802	623	0
hScc1	Bcell	GSE12603	33152429	33152646	217	0
hScc1	Bcell	GSE12603	33158439	33158841	402	0
hScc1	CdLS	GSE12603	33158179	33158978	799	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
22453	mRNA	HLA-DPB1	chr6	33151737	33162954	99	EST		chr6	33140941	33156533	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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