Annotation Detail for HLA-DQA1

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	HLA-DQA1 ( CD,CELIAC1,DQ-A1,FLJ27088,FLJ27328,GSE,HLA-DQA,MGC149527 )
Gene Full Name:	major histocompatibility complex, class II, DQ alpha 1
Band:	6p21.32
Quick Links	Entrez ID:3117; OMIM: 146880; Uniprot ID:DQA1_HUMAN; ENSEMBL ID: ENSG00000196735; HGNC ID: 4942
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
103	N-linked (GlcNAc...) (Potential).
143	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_002122
Location:chr6 32713160-32719405
strand:+

Upstream the gene:1 results
Downstream the gene:6 results
Inside the gene:2 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	32712091	32712119	28	1056

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FoxA1	MCF7	MACSdata	32739170	32739352	182	19856
Pol2	GM12878	GSE19551	32719459	32720142	683	395
Pol2	GM12878	GSE19551	32720806	32721503	697	1749
Pol2	GM12878	GSE19551	32721524	32721756	232	2235
Pol2	GM12878	GSE19551	32733793	32735206	1413	15094
VDR	GM10855-stim	GSE22484	32718433	32724152	5719	1887

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
NFkBII	GM18505	GSE19485	32712709	32713791	1082	0
Pol2	GM12878	GSE19551	32712797	32713949	1152	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
22444	mRNA	HLA-DQA1	chr6	32713160	32719407	135	mRNA		chr6	32712931	32714986	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved