AutismKB 2.0

Annotation Detail for HNRNPF


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Basic Information Top
Gene Symbol:HNRNPF ( HNRPF,MGC110997,OK/SW-cl.23,mcs94-1 )
Gene Full Name: heterogeneous nuclear ribonucleoprotein F
Band: 10q11.21
Quick LinksEntrez ID:3185; OMIM: 601037; Uniprot ID:HNRPF_HUMAN; ENSEMBL ID: ENSG00000169813; HGNC ID: 5039
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine; in Heterogeneous
2N-acetylmethionine; in Heterogeneous
87N6-acetyllysine.
104Phosphoserine.
161Phosphoserine.
187Phosphoserine.
224N6-acetyllysine.
246Phosphotyrosine.
310Phosphoserine.
Location(AA) Modifications Resource
2N-acetylmethionine.Swiss-Prot 53.0
245PhosphotyrosinePhospho.ELM 6.0
246Phosphotyrosine.Swiss-Prot 53.0
309PhosphoserinePhospho.ELM 6.0
310Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
54Phosphoserine(PKA)HMM predict
54Phosphoserine(PKG)HMM predict
215Phosphothreonine(PKC)HMM predict
243Phosphotyrosine(Syk)HMM predict
276SulfotyrosineHMM predict
310Phosphoserine(CDC2)HMM predict
362N-linkedHMM predict
394O-linkedHMM predict
394Phosphoserine(ATM)HMM predict
396Phosphoserine(IKK)HMM predict
400S-farnesylHMM predict
406SerineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004966
  • Location:chr10 43201070-43224619
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Gata1 K562GSE18868 43233300 43233937 637 8999
Gata2 K562GSE18868 43233302 43233980 678 9022
H3ac HepG2E 43226113 43226368 255 1621
Oct1 HelaGSE14283 43234869 43234924 55 10277
PHF8 HeLaGSE20725 43235456 43236692 1236 11455
PHF8 Hs68minusFBSGSE20725 43235583 43236776 1193 11560
Rb QuiescentGSE19898 43235860 43236090 230 11356
Rb SenescentGSE19898 43235736 43236143 407 11320
Rb shRbSenescenceGSE19898 43224794 43225039 245 297
STAT1 HeLaGSE12782 43240830 43242103 1273 16847
STAT1 HeLaGSE12783 43240864 43241934 1070 16780
TFAP2C MCF7GSE21234 43224691 43225136 445 294
USF1 HepG2E 43236549 43237242 693 12276
p130 QuiescentGSE19898 43224720 43225129 409 305
p130 QuiescentGSE19898 43235680 43236013 333 11227
p130 QuiescentGSE19898 43236032 43236256 224 11525
p130 QuiescentGSE19898 43236623 43236851 228 12118
p130 SenescentGSE19898 43224637 43225126 489 262
p130 SenescentGSE19898 43235590 43235997 407 11174
p130 shRbQuiescentGSE19898 43224395 43225307 912 232
p130 shRbSenescentGSE19898 43224177 43225173 996 56
p63 keratinocytesGSE17611 43236338 43237014 676 12057
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 43198437 43198469 32 2618
Oct1 H2O2-HelaGSE14283 43197133 43197161 28 3924
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 43206226 43206424 198 0
CTCF CD4SISSRdata 43206226 43206424 198 0
ETS1 JurkatGSE17954 43211807 43213338 1531 0
ETS1 JurkatGSE17954 43223840 43225120 1280 0
FOXA1 MCF7GSE15244 43211223 43212050 827 0
FoxA1 MCF7MACSdata 43211511 43211839 328 0
GABP k562GSE8489 43213012 43213332 320 0
H3K4me3 colorectalcancer 43212968 43213332 364 0
H3ac HepG2E 43206957 43207390 433 0
H3ac HepG2E 43208020 43208736 716 0
H3ac HepG2E 43210158 43211991 1833 0
H3ac HepG2E 43212864 43213332 468 0
H3ac HepG2E 43214853 43215474 621 0
H3ac HepG2E 43217505 43218289 784 0
H3ac HepG2E 43221361 43221833 472 0
H3ac HepG2E 43223006 43224208 1202 0
Oct1 H2O2-HelaGSE14283 43208032 43208059 27 0
PHF8 293TGSE20725 43222828 43225453 2625 0
PHF8 HeLaGSE20725 43222548 43225534 2986 0
PHF8 Hs68plusFBSGSE20725 43223948 43225052 1104 0
Pol2 GM12878GSE19551 43223778 43225237 1459 0
RARG MCF7GSE15244 43207244 43207390 146 0
RARG MCF7GSE15244 43211257 43211602 345 0
Rb GrowingGSE19898 43223138 43223390 252 0
Rb GrowingGSE19898 43224172 43224431 259 0
Rb QuiescentGSE19898 43224100 43224515 415 0
Rb SenescentGSE19898 43223564 43224751 1187 0
Rb shRbSenescenceGSE19898 43224262 43224449 187 0
TAF HelaGSE8489 43223163 43223349 186 0
TAF k562GSE8489 43212929 43213332 403 0
TAF k562GSE8489 43223065 43223822 757 0
TFAP2C MCF7GSE21234 43211060 43211964 904 0
TFAP2C MCF7GSE21234 43221364 43221896 532 0
TFAP2C MCF7GSE21234 43223026 43223657 631 0
USF1 HepG2E 43212826 43213332 506 0
USF2 HepG2E 43212864 43213332 468 0
VDR GM10861-UnstimGSE22484 43207689 43215690 8001 0
hScc1 BcellGSE12603 43206015 43206204 189 0
hScc1 BcellGSE12603 43211257 43211565 308 0
hScc1 BcellGSE12603 43222492 43222939 447 0
hScc1 BcellGSE12603 43223640 43223986 346 0
hScc1 BcellGSE12603 43224299 43224611 312 0
hScc1 CdLSGSE12603 43222529 43223282 753 0
p130 QuiescentGSE19898 43223698 43223991 293 0
p130 SenescentGSE19898 43224146 43224611 465 0
p130 shRbQuiescentGSE19898 43223345 43224204 859 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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