Annotation Detail for HOXA1

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Basic Information Top

Gene Symbol:	HOXA1 ( BSAS,HOX1,HOX1F,MGC45232 )
Gene Full Name:	homeobox A1
Band:	7p15.2
Quick Links	Entrez ID:3198; OMIM: 142955; Uniprot ID:HXA1_HUMAN; ENSEMBL ID: ENSG00000105991; HGNC ID: 5099
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
209	Antp-type hexapeptide.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	27102143	27102795	652	320

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	27094250	27094528	278	4752
FOXA1	MCF7	GSE15244	27097108	27097935	827	1619
FoxA1	MCF7	MACSdata	27097302	27097652	350	1664
RARA	MCF7	GSE15244	27096528	27099973	3445	890
TFAP2C	MCF7	GSE21234	27097206	27097704	498	1686
hScc1	Bcell	GSE12603	27094368	27094637	269	4638

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
USF1	HepG2	E	27099973	27102143	2170	0

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-101	hsa-mir-101-1	1	16549775
hsa-miR-101	hsa-mir-101-2	9	16549775
hsa-miR-10a	hsa-mir-10a	17	16549775
hsa-miR-10a*	hsa-mir-10a	17	16549775
hsa-miR-10b	hsa-mir-10b	2	16549775
hsa-miR-10b*	hsa-mir-10b	2	16549775
hsa-miR-126	hsa-mir-126	9	16549775
hsa-miR-126*	hsa-mir-126	9	16549775
hsa-miR-130a	hsa-mir-130a	11	16549775
hsa-miR-130a*	hsa-mir-130a	11	16549775
hsa-miR-135a	hsa-mir-135a-1	3	16549775
hsa-miR-135a	hsa-mir-135a-2	12	16549775
hsa-miR-135a*	hsa-mir-135a-1	3	16549775
hsa-miR-135b	hsa-mir-135b	1	16549775
hsa-miR-135b*	hsa-mir-135b	1	16549775
hsa-miR-17	hsa-mir-17	13	16549775
hsa-miR-17*	hsa-mir-17	13	16549775
hsa-miR-210	hsa-mir-210	11	19782034
hsa-miR-99a	hsa-mir-99a	21	16549775
hsa-miR-99a*	hsa-mir-99a	21	16549775

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
235	mRNA repression	TRUE	miR-10a	HOXA1	in vitro reporter gene assay (Luciferase)	16549775
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000105991		n_a	n_a	n_a	n_a	"malignant tumour, carcinoma"

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
23776	EST		chr7	26908505	26909186	26	mRNA	HOXA1	chr7	26905855	26908834	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018