Annotation Detail for HOXD1
Basic Information Top
| Gene Symbol: | HOXD1 ( HOX4,HOX4G,Hox-4.7 ) |
|---|---|
| Gene Full Name: | homeobox D1 |
| Band: | 2q31.1 |
| Quick Links | Entrez ID:3231; OMIM: 142987; Uniprot ID:HXD1_HUMAN; ENSEMBL ID: ENSG00000128645; HGNC ID: 5132 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 209 | Antp-type hexapeptide. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 12 | Phosphoserine(CK1) | HMM predict |
| 62 | O-linked | HMM predict |
| 62 | Phosphoserine(CDC2) | HMM predict |
| 64 | Phosphoserine(CDC2) | HMM predict |
| 64 | O-linked | HMM predict |
| 64 | Phosphoserine(ATM) | HMM predict |
| 73 | O-linked | HMM predict |
| 115 | Phosphotyrosine(Abl) | HMM predict |
| 182 | Phosphoserine(CDC2) | HMM predict |
| 182 | Phosphoserine(CDK) | HMM predict |
| 182 | O-linked | HMM predict |
| 193 | Phosphoserine(CDC2) | HMM predict |
| 193 | Phosphoserine(IKK) | HMM predict |
| 215 | Phosphoserine(CAMK2) | HMM predict |
| 227 | Phosphoserine(CDC2) | HMM predict |
| 227 | Phosphoserine(CDK) | HMM predict |
| 255 | Phosphothreonine(PKC) | HMM predict |
| 269 | N-linked | HMM predict |
| 307 | Phosphoserine(ATM) | HMM predict |
| 320 | Phosphoserine(IKK) | HMM predict |
| 320 | Phosphoserine(CDC2) | HMM predict |
| 324 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_024501
- Location:chr2 176761552-176763880
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K4me3 | colorectal | cancer | 176760673 | 176761157 | 484 | 638 |
| H3ac | HepG2 | E | 176760493 | 176761301 | 808 | 656 |
| USF1 | HepG2 | E | 176760455 | 176761381 | 926 | 635 |
| USF2 | HepG2 | E | 176760455 | 176761301 | 846 | 675 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | hES | GSE18292 | 176765315 | 176765876 | 561 | 1715 |
| hScc1 | Bcell | GSE12603 | 176773919 | 176774206 | 287 | 10182 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 176761337 | 176762151 | 814 | 0 |
| H3ac | HepG2 | E | 176762409 | 176763538 | 1129 | 0 |
| hScc1 | Bcell | GSE12603 | 176761776 | 176762113 | 337 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-10a | hsa-mir-10a | 17 | 18167555 |
| hsa-miR-10a* | hsa-mir-10a | 17 | 18167555 |
| hsa-miR-10b | hsa-mir-10b | 2 | 18167555 |
| hsa-miR-10b* | hsa-mir-10b | 2 | 18167555 |
| hsa-miR-196a | hsa-mir-196a-1 | 17 | 18167555 |
| hsa-miR-196a | hsa-mir-196a-2 | 12 | 18167555 |
| hsa-miR-196a* | hsa-mir-196a-2 | 12 | 18167555 |
| hsa-miR-196b | hsa-mir-196b | 7 | 18167555 |
| hsa-miR-615-3p | hsa-mir-615 | 12 | 18167555 |
| hsa-miR-615-5p | hsa-mir-615 | 12 | 18167555 |
| No data |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15321 | mRNA | HOXD1 | chr2 | 176878813 | 176881142 | 145 | EST | chr2 | 176866690 | 176879193 | Sense/Antisense (SA) pairs | |