AutismKB 2.0

Annotation Detail for HOXD9


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Basic Information Top
Gene Symbol:HOXD9 ( HOX4,HOX4C,Hox-4.3,Hox-5.2 )
Gene Full Name: homeobox D9
Band: 2q31.1
Quick LinksEntrez ID:3235; OMIM: 142982; Uniprot ID:HXD9_HUMAN; ENSEMBL ID: ENSG00000128709; HGNC ID: 5140
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
70Phosphoserine(IKK)HMM predict
74Phosphoserine(ATM)HMM predict
89Phosphotyrosine(Syk)HMM predict
98O-linkedHMM predict
136Phosphoserine(CDC2)HMM predict
136Phosphoserine(PKB)HMM predict
136Phosphoserine(ATM)HMM predict
136O-linkedHMM predict
140O-linkedHMM predict
162O-linkedHMM predict
165O-linkedHMM predict
166O-linkedHMM predict
166Phosphothreonine(PKC)HMM predict
167Phosphothreonine(PKC)HMM predict
167O-linkedHMM predict
168Phosphoserine(IKK)HMM predict
168O-linkedHMM predict
168Phosphoserine(CK1)HMM predict
172O-linkedHMM predict
173Phosphoserine(IKK)HMM predict
173O-linkedHMM predict
173Phosphoserine(CK1)HMM predict
175Phosphoserine(CK2)HMM predict
177Phosphoserine(CDC2)HMM predict
177Phosphoserine(CK1)HMM predict
193Phosphoserine(ATM)HMM predict
229O-linkedHMM predict
233Phosphoserine(IKK)HMM predict
253Phosphoserine(IKK)HMM predict
253Phosphoserine(CK1)HMM predict
275Phosphothreonine(PKC)HMM predict
313N-linkedHMM predict
338S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014213
  • Location:chr2 176695333-176697769
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 176700021 176700287 266 2385
CTCF CD4SISSRdata 176700021 176700287 266 2385
CTCF G2GSE9613 176697937 176698719 782 559
CTCF G2GSE9613 176699901 176700382 481 2372
hScc1 BcellGSE12603 176699942 176700533 591 2468
hScc1 CdLSGSE12603 176699865 176700533 668 2430
hScc1 G2GSE9613 176699942 176700533 591 2468
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 176695334 176696371 1037 0
H3K27me3 colorectalcancer 176696616 176697171 555 0
PHF8 HeLaGSE20725 176695014 176696436 1422 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
15317 mRNA HOXD9 chr2 176812594 176815031 85 EST chr2 176812594 176827103Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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