AutismKB 2.0

Annotation Detail for HOXD13


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Basic Information Top
Gene Symbol:HOXD13 ( BDE,BDSD,HOX4I,SPD )
Gene Full Name: homeobox D13
Band: 2q31.1
Quick LinksEntrez ID:3239; OMIM: 142989; Uniprot ID:HXD13_HUMAN; ENSEMBL ID: ENSG00000128714; HGNC ID: 5136
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
17Phosphoserine(IKK)HMM predict
17O-linkedHMM predict
18O-linkedHMM predict
18Phosphoserine(CK1)HMM predict
20Phosphoserine(CK1)HMM predict
21Phosphoserine(CK1)HMM predict
72O-linkedHMM predict
77Phosphoserine(IKK)HMM predict
77Phosphoserine(CK1)HMM predict
77Phosphoserine(PKA)HMM predict
79O-linkedHMM predict
82Phosphoserine(CK1)HMM predict
113O-linkedHMM predict
113O-linkedHMM predict
113O-linkedHMM predict
127Phosphotyrosine(Jak)HMM predict
146PhosphoserineHMM predict
146Phosphoserine(CDC2)HMM predict
159Phosphotyrosine(Syk)HMM predict
190Phosphoserine(ATM)HMM predict
192Phosphotyrosine(Syk)HMM predict
198Phosphotyrosine(INSR)HMM predict
215Phosphotyrosine(INSR)HMM predict
302Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000523
  • Location:chr2 176665777-176668911
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 176652397 176653462 1065 12848
CTCF G2GSE9613 176655201 176655588 387 10383
CTCF G2GSE9613 176658367 176658639 272 7275
CTCF G2GSE9613 176659126 176659635 509 6397
CTCF G2GSE9613 176661076 176661846 770 4317
H3K27me3 colorectalcancer 176654320 176655228 908 11004
H3K27me3 colorectalcancer 176656985 176657464 479 8553
H3K27me3 colorectalcancer 176659389 176660183 794 5992
H3K27me3 colorectalcancer 176660524 176660916 392 5058
H3K27me3 colorectalcancer 176661881 176662307 426 3684
H3K27me3 colorectalcancer 176663783 176664153 370 1810
H3K27me3 colorectalcancer 176664523 176665422 899 805
Oct1 H2O2-HelaGSE14283 176657432 176657471 39 8326
Oct1 H2O2-HelaGSE14283 176661055 176661090 35 4705
Oct1 HelaGSE14283 176657434 176657469 35 8326
Oct1 HelaGSE14283 176661063 176661091 28 4701
hScc1 BcellGSE12603 176645726 176646245 519 19792
hScc1 BcellGSE12603 176655088 176655550 462 10459
hScc1 BcellGSE12603 176659163 176659562 399 6415
hScc1 BcellGSE12603 176661076 176661646 570 4417
hScc1 CdLSGSE12603 176659163 176659599 436 6397
hScc1 CdLSGSE12603 176661009 176661646 637 4450
hScc1 G2GSE9613 176652469 176653462 993 12812
hScc1 G2GSE9613 176658367 176659738 1371 6725
hScc1 G2GSE9613 176661076 176661754 678 4363
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 176670633 176670833 200 1822
CTCF CD4SISSRdata 176670633 176670833 200 1822
CTCF HelaGSE12889 176670593 176670945 352 1858
Nanog hESGSE18292 176670031 176670342 311 1275
Sox2 hESGSE18292 176670034 176670430 396 1321
TFAP2C MCF7GSE21234 176669838 176670641 803 1328
hScc1 BcellGSE12603 176670452 176671041 589 1835
hScc1 CdLSGSE12603 176670363 176671167 804 1854
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 176666632 176668485 1853 0
SRF k562GSE8489 176666955 176668948 1993 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-27a hsa-mir-27a 19 21156786
hsa-miR-27a hsa-mir-27a 19 20488920
hsa-miR-27a* hsa-mir-27a 19 21156786
hsa-miR-27a* hsa-mir-27a 19 20488920
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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