AutismKB 2.0

Annotation Detail for HTR5A


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Basic Information Top
Gene Symbol:HTR5A ( 5-HT5A,MGC138226 )
Gene Full Name: 5-hydroxytryptamine (serotonin) receptor 5A
Band: 7q36.2
Quick LinksEntrez ID:3361; OMIM: 601305; Uniprot ID:5HT5A_HUMAN; ENSEMBL ID: ENSG00000157219; HGNC ID: 5300
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
6N-linked (GlcNAc...) (Potential).
21N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
6N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
21N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
11O-linkedHMM predict
14O-linkedHMM predict
14O-linkedHMM predict
16O-linkedHMM predict
16Phosphoserine(CDC2)HMM predict
16Phosphoserine(IKK)HMM predict
33Phosphoserine(IKK)HMM predict
131N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_024012
  • Location:chr7 154493478-154508391
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 154492367 154493240 873 675
KLF4 hESGSE17917 154475609 154475773 164 17788
Myc K562GSE19551 154492571 154493056 485 665
NRSF JurkatGSE13047 154491999 154494308 2309 325
NRSF mAbJurkat 154475532 154476198 666 17614
NRSF mAbJurkat 154476567 154476804 237 16793
NRSF mAbJurkat 154479996 154480566 570 13198
NRSF mAbJurkat 154482810 154483043 233 10552
NRSF mAbJurkat 154485120 154485726 606 8056
NRSF mAbJurkat 154486508 154486798 290 6826
NRSF mAbJurkat 154487208 154487640 432 6055
NRSF mAbJurkat 154488096 154488422 326 5220
NRSF mAbJurkat 154490382 154490645 263 2965
NRSF mAbJurkat 154491076 154493050 1974 1416
NRSF-mono JurkatQuESTdata 154492114 154494286 2172 279
NRSF pAbJurkat 154490382 154490645 263 2965
NRSF pAbJurkat 154491076 154493050 1974 1416
NRSF-poly JurkatQuESTdata 154492057 154494800 2743 50
Rb GrowingGSE19898 154492692 154492956 264 655
Rb QuiescentGSE19898 154492689 154493027 338 621
Rb SenescentGSE19898 154492576 154493089 513 646
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog hESGSE18292 154519108 154519299 191 10812
TFAP2C MCF7GSE21234 154513361 154513777 416 5178
TFAP2C MCF7GSE21234 154527543 154527955 412 19358
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NRSF mAbJurkat 154493309 154495566 2257 0
NRSF mAbJurkat 154496130 154500064 3934 0
NRSF mAbJurkat 154502634 154503280 646 0
NRSF mAbJurkat 154504440 154505275 835 0
NRSF mAbJurkat 154505618 154507884 2266 0
NRSF pAbJurkat 154493309 154495566 2257 0
NRSF pAbJurkat 154496621 154497152 531 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
24897 mRNA HTR5A chr7 154300257 154313845 501 mRNA chr7 154296435 154300892Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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