Annotation Detail for RAB43
Basic Information Top
| Gene Symbol: | RAB43 ( ISY1,MGC90481,RAB11B,RAB41 ) |
|---|---|
| Gene Full Name: | RAB43, member RAS oncogene family |
| Band: | 3q21.3 |
| Quick Links | Entrez ID:339122; OMIM: NA; Uniprot ID:RAB43_HUMAN; ENSEMBL ID: ENSG00000172780; HGNC ID: 19983 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 55 | Effector region (By similarity). | |
| 82 | Phosphothreonine (By similarity). | |
| 193 | Phosphoserine. | |
| 212 | Cysteine methyl ester (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 210 | S-geranylgeranyl cysteine (Bysimilarity). | Swiss-Prot 53.0 |
| 212 | S-geranylgeranyl cysteine (Bysimilarity). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 15 | Phosphotyrosine(Syk) | HMM predict |
| 131 | N-linked | HMM predict |
| 136 | Phosphoserine(CK1) | HMM predict |
| 142 | Phosphoserine(PKG) | HMM predict |
| 167 | Phosphoserine(CK2) | HMM predict |
| 212 | S-farnesyl | HMM predict |
- RefSeq ID: NM_198490
- Location:chr3 130289107-130323308
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 130323862 | 130325094 | 1232 | 1170 |
| H3ac | HepG2 | E | 130324322 | 130325132 | 810 | 1419 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 130286954 | 130288061 | 1107 | 1600 |
| P300 | T30-glioblastoma | GSE21026 | 130278594 | 130279272 | 678 | 10175 |
| Stat6 | IL-4-hr4 | GSE17850 | 130288274 | 130288943 | 669 | 499 |
| hScc1 | Bcell | GSE12603 | 130286989 | 130288385 | 1396 | 1421 |
| p63 | keratinocytes | GSE17611 | 130288569 | 130289203 | 634 | 222 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 130289476 | 130290271 | 795 | 0 |
| CTCF | G2 | GSE9613 | 130290797 | 130291500 | 703 | 0 |
| CTCF | G2 | GSE9613 | 130291913 | 130292888 | 975 | 0 |
| CTCF | G2 | GSE9613 | 130297049 | 130297175 | 126 | 0 |
| CTCF | G2 | GSE9613 | 130305408 | 130305917 | 509 | 0 |
| CTCF | G2 | GSE9613 | 130308514 | 130308800 | 286 | 0 |
| CTCF | G2 | GSE9613 | 130309329 | 130309963 | 634 | 0 |
| CTCF | G2 | GSE9613 | 130321177 | 130321792 | 615 | 0 |
| CTCF | G2 | GSE9613 | 130322421 | 130323158 | 737 | 0 |
| FOXA1 | MCF7 | GSE15244 | 130306459 | 130306709 | 250 | 0 |
| FOXA1 | MCF7 | GSE15244 | 130320688 | 130321513 | 825 | 0 |
| FOXA1 | MCF7 | GSE15244 | 130321828 | 130322467 | 639 | 0 |
| H3K4me3 | colorectal | cancer | 130321792 | 130322173 | 381 | 0 |
| H3ac | HepG2 | E | 130289403 | 130290597 | 1194 | 0 |
| H3ac | HepG2 | E | 130320193 | 130322421 | 2228 | 0 |
| KLF4 | hES | GSE17917 | 130322590 | 130322744 | 154 | 0 |
| Myc | K562 | GSE19551 | 130313914 | 130314285 | 371 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 130313647 | 130314397 | 750 | 0 |
| RARA | MCF7 | GSE15244 | 130320400 | 130320915 | 515 | 0 |
| RARA | MCF7 | GSE15244 | 130321757 | 130322200 | 443 | 0 |
| RARG | MCF7 | GSE15244 | 130306423 | 130306709 | 286 | 0 |
| RARG | MCF7 | GSE15244 | 130315842 | 130316335 | 493 | 0 |
| hScc1 | Bcell | GSE12603 | 130292391 | 130292888 | 497 | 0 |
| hScc1 | Bcell | GSE12603 | 130304589 | 130305068 | 479 | 0 |
| hScc1 | Bcell | GSE12603 | 130309159 | 130309826 | 667 | 0 |
| hScc1 | Bcell | GSE12603 | 130321177 | 130322012 | 835 | 0 |
| hScc1 | Bcell | GSE12603 | 130322636 | 130323158 | 522 | 0 |
| hScc1 | CdLS | GSE12603 | 130322173 | 130323158 | 985 | 0 |
| hScc1 | G2 | GSE9613 | 130289476 | 130290124 | 648 | 0 |
| p130 | shRbQuiescent | GSE19898 | 130321841 | 130322240 | 399 | 0 |
Validated miRNA targets