AutismKB 2.0

Annotation Detail for CCDC18


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Basic Information Top
Gene Symbol:CCDC18 ( NY-SAR-41,dJ717I23.1 )
Gene Full Name: coiled-coil domain containing 18
Band: 1p22.1
Quick LinksEntrez ID:343099; OMIM: NA; Uniprot ID:CCD18_HUMAN; ENSEMBL ID: ENSG00000122483; HGNC ID: 30370
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
334Phosphothreonine.
1068Phosphoserine.
Location(AA) Modifications Resource
334Phosphothreonine.Swiss-Prot 53.0
1068Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
6Phosphoserine(CK1)HMM predict
8Phosphotyrosine(Syk)HMM predict
8SulfotyrosineHMM predict
8Phosphotyrosine(INSR)HMM predict
9Phosphotyrosine(Syk)HMM predict
17Phosphoserine(CK1)HMM predict
45Phosphoserine(ATM)HMM predict
47Phosphoserine(CDC2)HMM predict
47Phosphoserine(IKK)HMM predict
49Phosphoserine(CK2)HMM predict
54Phosphotyrosine(Syk)HMM predict
54Phosphotyrosine(INSR)HMM predict
57N-linkedHMM predict
77N-linkedHMM predict
83N-linkedHMM predict
156Phosphoserine(PKG)HMM predict
156Phosphoserine(IKK)HMM predict
209Phosphoserine(CK1)HMM predict
276N-linkedHMM predict
279N-linkedHMM predict
434S-palmitoylHMM predict
461N-linkedHMM predict
465N-linkedHMM predict
468Phosphoserine(ATM)HMM predict
475N-linkedHMM predict
477Phosphoserine(ATM)HMM predict
481Phosphoserine(CK1)HMM predict
481Phosphoserine(IKK)HMM predict
484Phosphoserine(CK1)HMM predict
485Phosphoserine(CK1)HMM predict
565N-linkedHMM predict
567Phosphoserine(CK1)HMM predict
574Phosphothreonine(PKC)HMM predict
617Phosphoserine(CK1)HMM predict
673Phosphoserine(IKK)HMM predict
694Phosphothreonine(PKC)HMM predict
775N-linkedHMM predict
902Phosphoserine(ATM)HMM predict
984Phosphothreonine(PKC)HMM predict
1095Phosphoserine(ATM)HMM predict
1121SulfotyrosineHMM predict
1121Phosphotyrosine(Syk)HMM predict
1169Phosphoserine(CK1)HMM predict
1214Phosphoserine(PKG)HMM predict
1219Phosphoserine(CK1)HMM predict
1244Phosphoserine(ATM)HMM predict
1293Phosphothreonine(PKC)HMM predict
1323Phosphoserine(CDK)HMM predict
1323Phosphoserine(CDC2)HMM predict
1353Phosphoserine(PKA)HMM predict
1355PhosphoserineHMM predict
1370Phosphoserine(CK1)HMM predict
1394N-linkedHMM predict
1397Phosphotyrosine(INSR)HMM predict
1402O-linkedHMM predict
1414Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_206886
  • Location:chr1 93418507-93516853
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog ESGSE20650 93534627 93535348 721 18134
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 93491292 93491431 139 0
E2F4 G0GSE7516 93418521 93419720 1199 0
H3K4me3 colorectalcancer 93419355 93419720 365 0
H3ac HepG2E 93419355 93419720 365 0
LIN9 G0GSE7516 93417976 93419720 1744 0
LIN9 SGSE7516 93418343 93419720 1377 0
Nanog ESGSE20650 93476656 93477045 389 0
Nanog hESGSE18292 93476617 93477133 516 0
Oct1 HelaGSE14283 93435234 93435276 42 0
Oct1 HelaGSE14283 93444334 93444363 29 0
TAF HelaGSE8489 93472620 93472879 259 0
TAF k562GSE8489 93419355 93419720 365 0
TAF k562GSE8489 93441496 93442773 1277 0
TAF k562GSE8489 93503521 93503777 256 0
p130 QuiescentGSE19898 93418530 93419223 693 0
p130 G0GSE7516 93418413 93419720 1307 0
p130 SGSE7516 93418305 93419391 1086 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1122 mRNA NY-SAR-41 chr1 93357940 93456287 327 mRNA TMED5 chr1 93329427 93358267Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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