AutismKB 2.0

Annotation Detail for KCNT2


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Basic Information Top
Gene Symbol:KCNT2 ( KCa4.2,MGC119610,MGC119611,MGC119612,MGC119613,SLICK,SLO2.1 )
Gene Full Name: potassium channel, subfamily T, member 2
Band: 1q31.3
Quick LinksEntrez ID:343450; OMIM: 610044; Uniprot ID:KCNT2_HUMAN; ENSEMBL ID: ENSG00000162687; HGNC ID: 18866
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
99N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_198503
  • Location:chr1 194461535-194844121
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
PHF8 293TGSE20725 194843943 194844776 833 238
Rb SenescentGSE19898 194844394 194844652 258 402
hScc1 BcellGSE12603 194844350 194844561 211 334
p130 QuiescentGSE19898 194844604 194844888 284 625
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 194450539 194450565 26 10984
Oct1 HelaGSE14283 194450513 194450574 61 10992
Oct1 HelaGSE14283 194459691 194459726 35 1827
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 194828047 194828082 35 0
ER Fulvestrant-MCF7GSE14664 194842770 194842806 36 0
FoxA1 MCF7MACSdata 194683073 194683287 214 0
Nanog ESGSE20650 194500795 194501167 372 0
Nanog ESGSE20650 194547763 194548118 355 0
Nanog hESGSE18292 194600174 194600626 452 0
Oct1 H2O2-HelaGSE14283 194839041 194839088 47 0
Oct1 H2O2-HelaGSE14283 194842767 194842797 30 0
Oct1 HelaGSE14283 194522609 194522681 72 0
Oct1 HelaGSE14283 194552477 194552574 97 0
Oct1 HelaGSE14283 194596362 194596425 63 0
Oct1 HelaGSE14283 194674564 194674601 37 0
Oct1 HelaGSE14283 194769756 194769799 43 0
Oct1 HelaGSE14283 194770842 194770897 55 0
Oct1 HelaGSE14283 194802472 194802530 58 0
Oct1 HelaGSE14283 194825576 194825607 31 0
Oct1 HelaGSE14283 194842766 194842801 35 0
Oct4 ESGSE20650 194609639 194609903 264 0
Oct4 hESGSE21916 194580166 194580555 389 0
Oct4 hESGSE21916 194609578 194609895 317 0
P300 T0-glioblastomaGSE21026 194636444 194637005 561 0
Rb GrowingGSE19898 194843790 194843954 164 0
STAT1 HeLaGSE12782 194673765 194675116 1351 0
STAT1 HeLaGSE12782 194793671 194794881 1210 0
STAT1 HeLaGSE12783 194673799 194675029 1230 0
STAT1 HeLaGSE12783 194793673 194794847 1174 0
STAT1 IFNSISSRdata 194673579 194674730 1151 0
STAT1 IFNSISSRdata 194793388 194794747 1359 0
Sox2 hESGSE18292 194609522 194609862 340 0
TFAP2C MCF7GSE21234 194751997 194752642 645 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
2101 mRNA chr1 193223773 193226034 2261 mRNA SLICK chr1 192926569 193309156 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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