Annotation Detail for SLC35B2

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Basic Information Top

Gene Symbol:	SLC35B2 ( PAPST1,SLL,UGTrel4 )
Gene Full Name:	solute carrier family 35, member B2
Band:	6p21.1
Quick Links	Entrez ID:347734; OMIM: 610788; Uniprot ID:S35B2_HUMAN; ENSEMBL ID: ENSG00000157593; HGNC ID: 16872
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:10 results

Location(AA)	Modification
427	Phosphoserine.

Location(AA)	Modification	Resource
23	Phosphothreonine(MAPK)	HMM predict
141	O-linked	HMM predict
144	Phosphoserine(CDC2)	HMM predict
257	Phosphoserine(ATM)	HMM predict
263	O-linked	HMM predict
263	Phosphoserine(IKK)	HMM predict
264	Phosphoserine(CDC2)	HMM predict
264	O-linked	HMM predict
264	O-linked	HMM predict
283	Phosphoserine(IKK)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_178148
Location:chr6 44329821-44333249
strand:-

Upstream the gene:2 results
Downstream the gene:0 results
Inside the gene:15 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Rb	Senescent	GSE19898	44333162	44333428	266	46
p130	Quiescent	GSE19898	44333398	44333621	223	260

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	44328699	44330944	2245	0
CTCF	G2	GSE9613	44331847	44332337	490	0
Fos	K562	GSE19551	44332660	44333664	1004	0
H3ac	HepG2	E	44331376	44332810	1434	0
HIF1	Norm	HepG2	44332694	44333348	654	0
PHF8	293T	GSE20725	44332582	44333628	1046	0
PHF8	HeLa	GSE20725	44332493	44333551	1058	0
Rb	Quiescent	GSE19898	44332726	44333021	295	0
Rb	Senescent	GSE19898	44332141	44332539	398	0
USF1	HepG2	E	44331231	44332810	1579	0
USF2	HepG2	E	44331412	44332810	1398	0
hScc1	Bcell	GSE12603	44331847	44332240	393	0
hScc1	Bcell	GSE12603	44332845	44333619	774	0
p130	Senescent	GSE19898	44332398	44333088	690	0
p130	shRbSenescent	GSE19898	44332717	44333164	447	0

Validated miRNA targets

miR Walk:10 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-150	hsa-mir-150	19	18348159
hsa-miR-150*	hsa-mir-150	19	18348159
hsa-miR-155	hsa-mir-155	21	18348159
hsa-miR-155*	hsa-mir-155	21	18348159
hsa-miR-15a	hsa-mir-15a	13	18348159
hsa-miR-15a*	hsa-mir-15a	13	18348159
hsa-miR-16	hsa-mir-16-1	13	18348159
hsa-miR-16	hsa-mir-16-2	3	18348159
hsa-miR-21	hsa-mir-21	17	18348159
hsa-miR-21*	hsa-mir-21	17	18348159

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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