AutismKB 2.0

Annotation Detail for SERINC2


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Basic Information Top
Gene Symbol:SERINC2 ( MGC90340,PRO0899,TDE2,TDE2L )
Gene Full Name: serine incorporator 2
Band: 1p35.2
Quick LinksEntrez ID:347735; OMIM: NA; Uniprot ID:B4DJK5_HUMAN; ENSEMBL ID: ENSG00000168528; HGNC ID: 23231
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_178865
  • Location:chr1 31658549-31680110
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 31640137 31640418 281 18272
CTCF CD4SISSRdata 31640137 31640418 281 18272
CTCF G2GSE9613 31640064 31640611 547 18212
CTCF G2GSE9613 31641908 31642743 835 16224
ER Breast-CancerGSE22609 31642601 31643429 828 15535
ER MCF7GSE19013 31658180 31658819 639 50
H3ac HepG2E 31656167 31656689 522 2122
Rb SenescentGSE19898 31640062 31640607 545 18215
hScc1 BcellGSE12603 31640064 31640611 547 18212
hScc1 CdLSGSE12603 31640064 31640611 547 18212
p130 shRbSenescentGSE19898 31640114 31640592 478 18197
p63 keratinocytesGSE17611 31641842 31643164 1322 16047
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 31680896 31681100 204 888
FOXA1 MCF7GSE15244 31680993 31681613 620 1193
H3ac HepG2E 31684699 31684997 298 4738
H3ac HepG2E 31691057 31691406 349 11121
USF2 HepG2E 31691129 31691406 277 11157
USF2 HepG2E 31692533 31692960 427 12636
VDR GM10861-stimGSE22484 31691752 31693183 1431 12357
VDR GM10861-stimGSE22484 31698716 31699818 1102 19157
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 31668265 31668594 329 0
CTCF CD4SISSRdata 31668265 31668594 329 0
CTCF G2GSE9613 31666781 31667407 626 0
CTCF G2GSE9613 31668113 31668661 548 0
CTCF G2GSE9613 31670233 31670590 357 0
H3ac HepG2E 31659091 31660245 1154 0
H3ac HepG2E 31661147 31661445 298 0
H3ac HepG2E 31667914 31668052 138 0
H3ac HepG2E 31676052 31676426 374 0
PHF8 HeLaGSE20725 31658006 31659740 1734 0
TAFII hESGSE17917 31668216 31668454 238 0
TFAP2C MCF7GSE21234 31661652 31662100 448 0
VDR GM10855-stimGSE22484 31667796 31669670 1874 0
VDR GM10861-stimGSE22484 31667723 31669714 1991 0
VDR GM10861-stimGSE22484 31676806 31679606 2800 0
hScc1 BcellGSE12603 31658788 31659429 641 0
hScc1 BcellGSE12603 31667006 31667407 401 0
hScc1 BcellGSE12603 31667914 31668612 698 0
hScc1 BcellGSE12603 31679571 31679923 352 0
hScc1 CdLSGSE12603 31667914 31668661 747 0
hScc1 G2GSE9613 31668149 31668661 512 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
512 mRNA TDE2L chr1 31555055 31576617 170 EST chr1 31565665 31567396Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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