AutismKB 2.0

Annotation Detail for WDR53


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Basic Information Top
Gene Symbol:WDR53 ( MGC12928,MGC64882 )
Gene Full Name: WD repeat domain 53
Band: 3q29
Quick LinksEntrez ID:348793; OMIM: NA; Uniprot ID:WDR53_HUMAN; ENSEMBL ID: ENSG00000185798; HGNC ID: 28786
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
17N-linkedHMM predict
41Phosphothreonine(CDC2)HMM predict
60O-linkedHMM predict
60Phosphoserine(CDC2)HMM predict
103N-linkedHMM predict
107N-linkedHMM predict
151Phosphoserine(IKK)HMM predict
280PhosphoserineHMM predict
280Phosphoserine(CDC2)HMM predict
285Phosphothreonine(CDK)HMM predict
303N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_182627
  • Location:chr3 197765457-197779809
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 197780384 197780629 245 697
CTCF G2GSE9613 197784726 197784927 201 5017
ETS1 JurkatGSE17954 197779188 197780929 1741 249
H3K4me2 HCT116GSE10453 197780719 197781502 783 1301
H3K4me3 colorectalcancer 197780384 197781502 1118 1134
H3ac HepG2E 197780593 197781502 909 1238
Myc K562GSE19551 197779506 197780257 751 72
NFkBII GM10847GSE19485 197779288 197780808 1520 239
P300 T30-glioblastomaGSE21026 197779312 197780997 1685 345
PHF8 293TGSE20725 197779383 197780275 892 20
PHF8 HeLaGSE20725 197779460 197780917 1457 379
Rb SenescentGSE19898 197779413 197780336 923 65
Rb shRbSenescenceGSE19898 197780337 197780512 175 615
TAF k562GSE8489 197780629 197781502 873 1256
hScc1 BcellGSE12603 197780384 197780744 360 755
p130 shRbSenescentGSE19898 197780334 197780552 218 634
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 197748703 197749004 301 16604
CTCF CD4SISSRdata 197748703 197749004 301 16604
CTCF G2GSE9613 197748753 197749477 724 16343
FOXA1 MCF7GSE15244 197757795 197758564 769 7278
FoxA1 MCF7MACSdata 197757919 197758123 204 7437
H3ac HepG2E 197747783 197748027 244 17553
hScc1 CdLSGSE12603 197748753 197749104 351 16529
hScc1 G2GSE9613 197748753 197749250 497 16456
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 197779395 197780049 654 0
FOXA1 MCF7GSE15244 197774584 197774814 230 0
FOXA1 MCF7GSE15244 197779435 197779804 369 0
H3K4me3 colorectalcancer 197778200 197778796 596 0
H3K4me3 colorectalcancer 197779252 197779471 219 0
H3ac HepG2E 197777991 197778796 805 0
LIN9 SGSE7516 197779471 197780049 578 0
NFkBII GM15510GSE19485 197779057 197780399 1342 0
RARA MCF7GSE15244 197774477 197774814 337 0
RARA MCF7GSE15244 197775143 197775586 443 0
RARG MCF7GSE15244 197774477 197774814 337 0
Rb GrowingGSE19898 197779484 197779956 472 0
Rb QuiescentGSE19898 197779347 197780002 655 0
Rb shRbQuiescentGSE19898 197779558 197779947 389 0
Rb shRbSenescenceGSE19898 197779534 197780040 506 0
hScc1 BcellGSE12603 197779514 197780049 535 0
hScc1 G2GSE9613 197779514 197780049 535 0
p130 QuiescentGSE19898 197779575 197779952 377 0
p130 SenescentGSE19898 197779257 197780184 927 0
p130 shRbQuiescentGSE19898 197779270 197779990 720 0
p130 shRbSenescentGSE19898 197779543 197779995 452 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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