AutismKB 2.0

Annotation Detail for ITGA9


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Basic Information Top
Gene Symbol:ITGA9 ( ALPHA-RLC,ITGA4L,RLC )
Gene Full Name: integrin, alpha 9
Band: 3p22.2
Quick LinksEntrez ID:3680; OMIM: 603963; Uniprot ID:ITA9_HUMAN; ENSEMBL ID: ENSG00000144668; HGNC ID: 6145
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
225N-linked (GlcNAc...).
476N-linked (GlcNAc...) (Potential).
493N-linked (GlcNAc...) (Potential).
612N-linked (GlcNAc...) (Potential).
654N-linked (GlcNAc...) (Potential).
658N-linked (GlcNAc...) (Potential).
672N-linked (GlcNAc...) (Potential).
676N-linked (GlcNAc...) (Potential).
807N-linked (GlcNAc...) (Potential).
854N-linked (GlcNAc...) (Potential).
904N-linked (GlcNAc...) (Potential).
1009GFFKR motif.
Location(AA) Modifications Resource
225N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
476N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
493N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
612N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
654N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
658N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
672N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
676N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
807N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
854N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
904N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
8MethylarginineHMM predict
77Phosphoserine(ATM)HMM predict
80Phosphoserine(CDC2)HMM predict
142S-palmitoylHMM predict
225N-linkedHMM predict
229N-linkedHMM predict
231Phosphotyrosine(Jak)HMM predict
360Phosphotyrosine(EGFR)HMM predict
415Phosphoserine(PKG)HMM predict
431Phosphoserine(ATM)HMM predict
441Phosphotyrosine(EGFR)HMM predict
441Phosphotyrosine(Syk)HMM predict
476N-linkedHMM predict
493N-linkedHMM predict
513Phosphotyrosine(INSR)HMM predict
580Phosphoserine(CK1)HMM predict
586Phosphothreonine(CK2)HMM predict
612N-linkedHMM predict
731Phosphoserine(CK2)HMM predict
731Phosphoserine(ATM)HMM predict
753Phosphoserine(CK1)HMM predict
753Phosphoserine(PKB)HMM predict
772Phosphoserine(CK1)HMM predict
807N-linkedHMM predict
818O-linkedHMM predict
819O-linkedHMM predict
854N-linkedHMM predict
860N-linkedHMM predict
919Phosphotyrosine(Jak)HMM predict
1020AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002207
  • Location:chr3 37468816-37836282
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 37468385 37468619 234 315
CTCF CD4SISSRdata 37468385 37468619 234 315
ER Fulvestrant-MCF7GSE14664 37466623 37466656 33 2177
H3K27me3 colorectalcancer 37467056 37467677 621 1450
Oct1 HelaGSE14283 37466605 37466657 52 2186
hScc1 BcellGSE12603 37468158 37469322 1164 77
hScc1 CdLSGSE12603 37468122 37468906 784 303
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 37850286 37850612 326 14167
STAT1 HeLaGSE12782 37839738 37841322 1584 4248
STAT1 HeLaGSE12783 37839767 37841288 1521 4245
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 37547051 37547452 401 0
CBP T30-glioblastomaGSE21026 37546778 37547269 491 0
CTCF CD4GSE12889 37796034 37796437 403 0
CTCF CD4SISSRdata 37796034 37796437 403 0
CTCF G2GSE9613 37468441 37469286 845 0
CTCF G2GSE9613 37470475 37470911 436 0
CTCF G2GSE9613 37487315 37487963 648 0
CTCF G2GSE9613 37507765 37507938 173 0
CTCF G2GSE9613 37510816 37511076 260 0
CTCF G2GSE9613 37515009 37515268 259 0
CTCF G2GSE9613 37552548 37552694 146 0
CTCF G2GSE9613 37561374 37561593 219 0
CTCF G2GSE9613 37570813 37571182 369 0
CTCF G2GSE9613 37597580 37597748 168 0
CTCF G2GSE9613 37606892 37607266 374 0
CTCF G2GSE9613 37625455 37625600 145 0
CTCF G2GSE9613 37657179 37657401 222 0
CTCF G2GSE9613 37658011 37658267 256 0
CTCF G2GSE9613 37756408 37756877 469 0
CTCF G2GSE9613 37758046 37758365 319 0
CTCF G2GSE9613 37758692 37758994 302 0
CTCF G2GSE9613 37796185 37796392 207 0
CTCF G2GSE9613 37798881 37799103 222 0
CTCF G2GSE9613 37811994 37812169 175 0
CTCF G2GSE9613 37820293 37820477 184 0
ER E2-MCF7GSE14664 37788974 37789006 32 0
ER E2-MCF7GSE14664 37791180 37791212 32 0
ER Fulvestrant-MCF7GSE14664 37507910 37507948 38 0
FOXA1 MCF7GSE15244 37514250 37514845 595 0
FOXA1 MCF7GSE15244 37559337 37559791 454 0
FOXA1 MCF7GSE15244 37611500 37612574 1074 0
FOXA1 MCF7GSE15244 37769645 37770297 652 0
FOXA1 MCF7GSE15244 37798558 37799325 767 0
FOXA1 MCF7GSE15244 37832677 37832967 290 0
Fos K562GSE19551 37677276 37677784 508 0
FoxA1 MCF7MACSdata 37611691 37612116 425 0
FoxA1 MCF7MACSdata 37798967 37799330 363 0
Gata2 K562GSE18868 37782026 37782728 702 0
NRSF JurkatGSE13047 37636426 37637531 1105 0
NRSF mAbJurkat 37473511 37474592 1081 0
NRSF mAbJurkat 37635637 37635801 164 0
NRSF mAbJurkat 37636718 37637442 724 0
NRSF mAbJurkat 37637836 37638542 706 0
NRSF mAbJurkat 37639446 37640811 1365 0
NRSF-mono JurkatQuESTdata 37473998 37474423 425 0
NRSF-mono JurkatQuESTdata 37636181 37636366 185 0
NRSF-mono JurkatQuESTdata 37636480 37637524 1044 0
NRSF-poly JurkatQuESTdata 37474127 37474516 389 0
NRSF-poly JurkatQuESTdata 37636273 37637527 1254 0
Nanog hESGSE18292 37575895 37576288 393 0
Oct1 H2O2-HelaGSE14283 37671712 37671750 38 0
Oct1 HelaGSE14283 37507900 37507959 59 0
Oct1 HelaGSE14283 37508416 37508452 36 0
Oct1 HelaGSE14283 37550009 37550045 36 0
Oct1 HelaGSE14283 37671711 37671751 40 0
Oct1 HelaGSE14283 37755733 37755785 52 0
Oct1 HelaGSE14283 37775265 37775308 43 0
P300 T0-glioblastomaGSE21026 37547047 37547269 222 0
P300 T0-glioblastomaGSE21026 37798862 37799399 537 0
P300 T30-glioblastomaGSE21026 37729481 37730137 656 0
P300 T30-glioblastomaGSE21026 37798820 37799418 598 0
RARA MCF7GSE15244 37798703 37799325 622 0
RARG MCF7GSE15244 37611803 37612219 416 0
Stat6 IL-4-hr4GSE17850 37802140 37802855 715 0
TFAP2C MCF7GSE21234 37798687 37799454 767 0
hScc1 BcellGSE12603 37498101 37498619 518 0
hScc1 BcellGSE12603 37640892 37641055 163 0
hScc1 CdLSGSE12603 37795987 37796645 658 0
hScc1 G2GSE9613 37468344 37469385 1041 0
hScc1 G2GSE9613 37489839 37490022 183 0
hScc1 G2GSE9613 37758046 37758498 452 0
hScc1 G2GSE9613 37796148 37796392 244 0
p63 keratinocytesGSE17611 37677084 37677964 880 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17926 mRNA ITGA9 chr3 37468816 37836285 40 EST chr3 37835227 37867988Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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