AutismKB 2.0

Annotation Detail for GALNTL4


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Basic Information Top
Gene Symbol:GALNTL4 ( GALNT15,GALNT18,GalNAc-T15,MGC71806 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
Band: 11p15.3
Quick LinksEntrez ID:374378; OMIM: NA; Uniprot ID:GLTL4_HUMAN; ENSEMBL ID: ENSG00000110328; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
146N-linked (GlcNAc...) (Potential).
195N-linked (GlcNAc...) (Potential).
320N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
146N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
195N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
320N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
7Phosphothreonine(PKA)HMM predict
146N-linkedHMM predict
181Phosphothreonine(MAPK)HMM predict
195N-linkedHMM predict
196Phosphoserine(CK2)HMM predict
196Phosphoserine(CK1)HMM predict
197Phosphoserine(CK1)HMM predict
197Phosphoserine(CK2)HMM predict
198N-linkedHMM predict
293SulfotyrosineHMM predict
320N-linkedHMM predict
507Phosphotyrosine(Syk)HMM predict
511Phosphoserine(ATM)HMM predict
520Phosphoserine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_198516
  • Location:chr11 11249001-11600127
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 11599883 11600495 612 62
FoxA1 MCF7MACSdata 11600984 11601224 240 977
Nanog hESGSE18292 11606908 11607475 567 7064
Rb SenescentGSE19898 11600122 11600400 278 134
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 11244165 11244538 373 4650
CTCF CD4SISSRdata 11244165 11244538 373 4650
hScc1 BcellGSE12603 11244064 11244588 524 4676
hScc1 CdLSGSE12603 11243971 11244785 814 4624
hScc1 G2GSE9613 11243971 11244523 552 4755
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 11291253 11292199 946 0
CTCF HelaGSE12889 11325156 11325498 342 0
ER Breast-CancerGSE22609 11370843 11371444 601 0
ER E2-MCF7GSE14664 11307314 11307347 33 0
ER MCF7GSE19013 11391754 11392217 463 0
ER MCF7GSE19013 11432741 11433609 868 0
FOXA1 DLD1GSE12801 11584054 11584711 657 0
FOXA1 MCF7GSE15244 11331055 11331332 277 0
FOXA1 MCF7GSE15244 11360840 11361314 474 0
FOXA1 MCF7GSE15244 11390235 11390501 266 0
FOXA1 MCF7GSE15244 11432754 11433117 363 0
FOXA1 MCF7GSE15244 11562430 11562773 343 0
FOXA1 MCF7GSE15244 11583982 11584673 691 0
FOXA1 MCF7GSE15244 11585944 11586388 444 0
FoxA1 MCF7MACSdata 11360959 11361171 212 0
FoxA1 MCF7MACSdata 11433009 11433260 251 0
FoxA1 MCF7MACSdata 11584209 11584404 195 0
GATA3 MCF7GSE15244 11373701 11374141 440 0
KLF4 hESGSE17917 11388128 11388300 172 0
NRSF JurkatGSE13047 11344715 11345598 883 0
NRSF JurkatSISSRdata 11528698 11528932 234 0
NRSF mAbJurkat 11343858 11346139 2281 0
NRSF mAbJurkat 11347756 11349623 1867 0
NRSF-mono JurkatQuESTdata 11344714 11345518 804 0
NRSF-mono JurkatQuESTdata 11528656 11529071 415 0
NRSF pAbJurkat 11328825 11329359 534 0
NRSF pAbJurkat 11344956 11345734 778 0
NRSF pAbJurkat 11373198 11373669 471 0
NRSF pAbJurkat 11394775 11394974 199 0
NRSF pAbJurkat 11598409 11598765 356 0
NRSF-poly JurkatQuESTdata 11344745 11345440 695 0
Nanog ESGSE20650 11258007 11258597 590 0
Nanog ESGSE20650 11341821 11342255 434 0
Nanog hESGSE18292 11341676 11342321 645 0
Oct1 H2O2-HelaGSE14283 11304934 11304975 41 0
Oct1 H2O2-HelaGSE14283 11351211 11351242 31 0
Oct1 H2O2-HelaGSE14283 11461258 11461287 29 0
Oct1 H2O2-HelaGSE14283 11484748 11484779 31 0
Oct1 H2O2-HelaGSE14283 11575225 11575263 38 0
Oct1 HelaGSE14283 11269960 11269993 33 0
Oct1 HelaGSE14283 11304934 11304982 48 0
Oct1 HelaGSE14283 11351211 11351239 28 0
Oct1 HelaGSE14283 11475462 11475505 43 0
Oct1 HelaGSE14283 11484748 11484779 31 0
Oct1 HelaGSE14283 11507212 11507251 39 0
Oct1 HelaGSE14283 11567993 11568022 29 0
Oct1 HelaGSE14283 11575225 11575263 38 0
P300 T30-glioblastomaGSE21026 11257947 11258625 678 0
P300 T30-glioblastomaGSE21026 11369722 11370538 816 0
P300 T30-glioblastomaGSE21026 11562289 11563165 876 0
PHF8 293TGSE20725 11599516 11600448 932 0
RARA MCF7GSE15244 11367811 11368239 428 0
RARA MCF7GSE15244 11432614 11433189 575 0
RARG MCF7GSE15244 11390235 11390537 302 0
RARG MCF7GSE15244 11391874 11392295 421 0
RARG MCF7GSE15244 11432683 11433080 397 0
Rb QuiescentGSE19898 11599986 11600239 253 0
TAF HelaGSE8489 11443867 11444084 217 0
TFAP2C MCF7GSE21234 11389600 11390213 613 0
TFAP2C MCF7GSE21234 11432693 11433420 727 0
TFAP2C MCF7GSE21234 11441532 11441776 244 0
TFAP2C MCF7GSE21234 11536512 11536776 264 0
hScc1 BcellGSE12603 11427509 11427778 269 0
hScc1 BcellGSE12603 11479886 11480354 468 0
hScc1 BcellGSE12603 11599042 11600531 1489 0
hScc1 CdLSGSE12603 11378983 11379312 329 0
hScc1 CdLSGSE12603 11596961 11597189 228 0
hScc1 CdLSGSE12603 11598970 11599347 377 0
p130 QuiescentGSE19898 11374891 11375067 176 0
p130 SenescentGSE19898 11374228 11375108 880 0
p130 shRbQuiescentGSE19898 11374846 11375076 230 0
p130 shRbSenescentGSE19898 11373931 11374288 357 0
p63 keratinocytesGSE17611 11389520 11390379 859 0
p63 keratinocytesGSE17611 11498047 11499113 1066 0
p63 keratinocytesGSE17611 11562119 11563016 897 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4132 EST chr11 11548206 11551905 3699 mRNA GALNTL4 chr11 11248998 11600128 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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