Annotation Detail for NHLRC3

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Basic Information Top

Gene Symbol:	NHLRC3 ( DKFZp313M1221,DKFZp686E1140 )
Gene Full Name:	NHL repeat containing 3
Band:	13q13.3
Quick Links	Entrez ID:387921; OMIM: NA; Uniprot ID:NHLC3_HUMAN; ENSEMBL ID: ENSG00000188811; HGNC ID: 33751
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:4 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
32	N-linked (GlcNAc...) (Potential).
101	N-linked (GlcNAc...) (Potential).
206	N-linked (GlcNAc...) (Potential).
278	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001012754
Location:chr13 38510454-38522241
strand:+

Upstream the gene:4 results
Downstream the gene:4 results
Inside the gene:10 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
PHF8	293T	GSE20725	38509754	38511054	1300	51
PHF8	HeLa	GSE20725	38509550	38511153	1603	103
Rb	Quiescent	GSE19898	38509947	38510871	924	46
Rb	Senescent	GSE19898	38509896	38510784	888	115

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	38535655	38535733	78	13453
hScc1	Bcell	GSE12603	38523345	38523607	262	1235
hScc1	Bcell	GSE12603	38534432	38534702	270	12326
hScc1	CdLS	GSE12603	38523284	38523662	378	1232

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Nanog	ES	GSE20650	38519789	38520066	277	0
RARG	MCF7	GSE15244	38510221	38511561	1340	0
RNAII	Tamoxifen-MCF7	GSE14664	38512065	38512163	98	0
Rb	Growing	GSE19898	38510296	38510844	548	0
Rb	shRbQuiescent	GSE19898	38510400	38510737	337	0
TAF	k562	GSE8489	38510950	38511726	776	0
TFAP2C	MCF7	GSE21234	38510035	38510976	941	0
p130	Quiescent	GSE19898	38510441	38510757	316	0
p130	shRbQuiescent	GSE19898	38510311	38511028	717	0
p130	shRbSenescent	GSE19898	38510003	38510947	944	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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