AutismKB 2.0

Annotation Detail for SLC6A17


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Basic Information Top
Gene Symbol:SLC6A17 ( NTT4 )
Gene Full Name: solute carrier family 6, member 17
Band: 1p13.3
Quick LinksEntrez ID:388662; OMIM: 610299; Uniprot ID:S6A17_HUMAN; ENSEMBL ID: ENSG00000197106; HGNC ID: 31399
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
186N-linked (GlcNAc...) (Potential).
377Phosphotyrosine (By similarity).
393N-linked (GlcNAc...) (Potential).
665Phosphoserine (By similarity).
700Phosphothreonine (By similarity).
722Phosphothreonine (By similarity).
Location(AA) Modifications Resource
186N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
393N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
665Phosphoserine (By similarity).Swiss-Prot 53.0
700Phosphothreonine (By similarity).Swiss-Prot 53.0
722Phosphothreonine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
8Phosphothreonine(PKC)HMM predict
13Phosphoserine(CK1)HMM predict
98Phosphotyrosine(INSR)HMM predict
179Phosphoserine(IKK)HMM predict
186N-linkedHMM predict
188Phosphoserine(PKA)HMM predict
214Phosphoserine(ATM)HMM predict
218Phosphoserine(CK1)HMM predict
230S-palmitoylHMM predict
393N-linkedHMM predict
402Phosphotyrosine(INSR)HMM predict
402Phosphotyrosine(SRC)HMM predict
402Phosphotyrosine(Syk)HMM predict
411Phosphothreonine(PKC)HMM predict
501S-palmitoylHMM predict
648Phosphoserine(IKK)HMM predict
665Phosphoserine(CK2)HMM predict
686Phosphoserine(CDC2)HMM predict
686O-linkedHMM predict
699O-linkedHMM predict
701Phosphoserine(CDK)HMM predict
701Phosphoserine(CDC2)HMM predict
701Phosphoserine(IKK)HMM predict
717Phosphotyrosine(INSR)HMM predict
722Phosphothreonine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001010898
  • Location:chr1 110494630-110546343
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb SenescentGSE19898 110494392 110494821 429 24
hScc1 BcellGSE12603 110488123 110488302 179 6418
p130 SenescentGSE19898 110494438 110494719 281 52
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 110547024 110547430 406 884
CTCF CD4SISSRdata 110547024 110547430 406 884
CTCF G2GSE9613 110546907 110547571 664 896
CTCF G2GSE9613 110548348 110548488 140 2075
hScc1 BcellGSE12603 110547015 110547571 556 950
hScc1 CdLSGSE12603 110547128 110547643 515 1042
hScc1 G2GSE9613 110546943 110547643 700 950
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 110541139 110541349 210 0
CTCF CD4SISSRdata 110541139 110541349 210 0
CTCF G2GSE9613 110541180 110541713 533 0
CTCF G2GSE9613 110542948 110543302 354 0
CTCF G2GSE9613 110545553 110545729 176 0
CTCF G2GSE9613 110546243 110546396 153 0
Myc K562GSE19551 110500064 110500417 353 0
NRSF JurkatGSE13047 110499578 110500863 1285 0
NRSF JurkatSISSRdata 110499868 110500681 813 0
NRSF mAbJurkat 110495534 110501397 5863 0
NRSF mAbJurkat 110501764 110502257 493 0
NRSF mAbJurkat 110503309 110504901 1592 0
NRSF-mono JurkatQuESTdata 110499868 110500692 824 0
NRSF-poly JurkatQuESTdata 110499592 110500771 1179 0
Nanog hESGSE18292 110517619 110518136 517 0
Oct1 H2O2-HelaGSE14283 110511867 110511894 27 0
Oct1 H2O2-HelaGSE14283 110540447 110540494 47 0
Oct1 H2O2-HelaGSE14283 110543007 110543033 26 0
Oct1 HelaGSE14283 110540429 110540494 65 0
RARA MCF7GSE15244 110519933 110520526 593 0
RNAII Tamoxifen-MCF7GSE14664 110540448 110540493 45 0
TFAP2C MCF7GSE21234 110507608 110508271 663 0
hScc1 BcellGSE12603 110494363 110495376 1013 0
hScc1 BcellGSE12603 110541180 110541494 314 0
hScc1 BcellGSE12603 110542287 110542618 331 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1267 mRNA SLC6A17 chr1 110405149 110456863 489 EST chr1 110421470 110427153Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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