AutismKB 2.0

Annotation Detail for LAMA3


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Basic Information Top
Gene Symbol:LAMA3 ( BM600,E170,LAMNA,LOCS,lama3a )
Gene Full Name: laminin, alpha 3
Band: 18q11.2
Quick LinksEntrez ID:3909; OMIM: 600805; Uniprot ID:LAMA3_HUMAN; ENSEMBL ID: ENSG00000053747; HGNC ID: 6483
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
142N-linked (GlcNAc...) (Potential).
242N-linked (GlcNAc...) (Potential).
2280Cell attachment site (Potential).
2365N-linked (GlcNAc...) (Potential).
2502N-linked (GlcNAc...) (Potential).
2584N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
542N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
645N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
745N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
882N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
964N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1108N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1131N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1325N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1477N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1667N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
19Phosphoserine(ATM)HMM predict
64S-palmitoylHMM predict
114S-palmitoylHMM predict
167S-palmitoylHMM predict
307Phosphothreonine(PKA)HMM predict
470Phosphoserine(IKK)HMM predict
488Phosphotyrosine(INSR)HMM predict
488Phosphotyrosine(Syk)HMM predict
542N-linkedHMM predict
544Phosphoserine(CAMK2)HMM predict
578Phosphoserine(PKG)HMM predict
582O-linkedHMM predict
582Phosphoserine(IKK)HMM predict
613Phosphothreonine(PKC)HMM predict
622Phosphoserine(IKK)HMM predict
645N-linkedHMM predict
793Phosphotyrosine(INSR)HMM predict
828Phosphotyrosine(INSR)HMM predict
862Phosphothreonine(PKC)HMM predict
882N-linkedHMM predict
889O-linkedHMM predict
890O-linkedHMM predict
890Phosphoserine(IKK)HMM predict
894Phosphothreonine(MAPK)HMM predict
964N-linkedHMM predict
988Phosphotyrosine(Abl)HMM predict
988Phosphotyrosine(EGFR)HMM predict
993Phosphothreonine(PKC)HMM predict
1108N-linkedHMM predict
1131N-linkedHMM predict
1151PhosphoserineHMM predict
1204Phosphotyrosine(INSR)HMM predict
1204Phosphotyrosine(Jak)HMM predict
1210Phosphoserine(CK1)HMM predict
1219Phosphoserine(CDC2)HMM predict
1232Phosphoserine(CAMK2)HMM predict
1287Phosphoserine(MAPK)HMM predict
1287Phosphoserine(ATM)HMM predict
1287Phosphoserine(CDC2)HMM predict
1325N-linkedHMM predict
1343Phosphoserine(CDC2)HMM predict
1355Phosphoserine(MAPK)HMM predict
1355Phosphoserine(CDK)HMM predict
1355Phosphoserine(ATM)HMM predict
1450Phosphothreonine(PKC)HMM predict
1473Phosphoserine(CK1)HMM predict
1473Phosphoserine(IKK)HMM predict
1477N-linkedHMM predict
1493Phosphoserine(ATM)HMM predict
1498Phosphoserine(IKK)HMM predict
1520Phosphothreonine(CDK)HMM predict
1520Phosphothreonine(MAPK)HMM predict
1524O-linkedHMM predict
1540Phosphotyrosine(INSR)HMM predict
1607O-linkedHMM predict
1607O-linkedHMM predict
1609O-linkedHMM predict
1611Phosphothreonine(MAPK)HMM predict
1611Phosphothreonine(CDK)HMM predict
1615Phosphoserine(PKA)HMM predict
1641Phosphoserine(CK1)HMM predict
1654O-linkedHMM predict
1667N-linkedHMM predict
1682S-palmitoylHMM predict
1696O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000227
  • Location:chr18 19707003-19789024
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 19798583 19798810 227 9672
KLF4 hESGSE17917 19802320 19802614 294 13443
Oct4 hESGSE17917 19793440 19793586 146 4489
hScc1 BcellGSE12603 19790927 19791242 315 2060
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 19752441 19752828 387 0
CTCF CD4SISSRdata 19752441 19752828 387 0
CTCF G2GSE9613 19752228 19752892 664 0
Oct4 hESGSE17917 19719097 19719423 326 0
P300 T30-glioblastomaGSE21026 19778001 19778774 773 0
STAT1 HeLaGSE12783 19765496 19767065 1569 0
TAF HelaGSE8489 19769742 19769983 241 0
TFAP2C MCF7GSE21234 19760579 19760953 374 0
USF1 HepG2E 19717172 19717804 632 0
VDR GM10855-stimGSE22484 19734350 19735777 1427 0
VDR GM10861-stimGSE22484 19734145 19735792 1647 0
hScc1 BcellGSE12603 19752311 19752753 442 0
hScc1 CdLSGSE12603 19752275 19752787 512 0
hScc1 G2GSE9613 19752228 19752892 664 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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