AutismKB 2.0

Annotation Detail for LAMP1


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Basic Information Top
Gene Symbol:LAMP1 ( CD107a,LAMPA,LGP120 )
Gene Full Name: lysosomal-associated membrane protein 1
Band: 13q34
Quick LinksEntrez ID:3916; OMIM: 153330; Uniprot ID:LAMP1_HUMAN; ENSEMBL ID: ENSG00000185896; HGNC ID: 6499
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
37N-linked (GlcNAc...).
45N-linked (GlcNAc...).
62N-linked (GlcNAc...)
76N-linked (GlcNAc...).
84N-linked (GlcNAc...).
103N-linked (GlcNAc...).
107N-linked (GlcNAc...).
121N-linked (GlcNAc...)
130N-linked (GlcNAc...)
165N-linked (GlcNAc...).
181N-linked (GlcNAc...).
197O-linked (GalNAc...); partial.
199O-linked (GalNAc...).
200O-linked (GalNAc...).
207O-linked (GalNAc...).
209O-linked (GalNAc...).
211O-linked (GalNAc...).
223N-linked (GlcNAc...)
228N-linked (GlcNAc...)
241N-linked (GlcNAc...).
249N-linked (GlcNAc...).
261N-linked (GlcNAc...).
293N-linked (GlcNAc...).
322N-linked (GlcNAc...).
Location(AA) Modifications Resource
36N-linked (GlcNAc...).Swiss-Prot 53.0
44N-linked (GlcNAc...).Swiss-Prot 53.0
61N-linked (GlcNAc...)(polylactosaminoglycan).Swiss-Prot 53.0
75N-linked (GlcNAc...).Swiss-Prot 53.0
83N-linked (GlcNAc...).Swiss-Prot 53.0
102N-linked (GlcNAc...).Swiss-Prot 53.0
106N-linked (GlcNAc...).Swiss-Prot 53.0
120N-linked (GlcNAc...)(polylactosaminoglycan).Swiss-Prot 53.0
129N-linked (GlcNAc...)(polylactosaminoglycan).Swiss-Prot 53.0
164N-linked (GlcNAc...).Swiss-Prot 53.0
180N-linked (GlcNAc...).Swiss-Prot 53.0
196O-linked (GalNAc...); partial.Swiss-Prot 53.0
198O-linked (GalNAc...).Swiss-Prot 53.0
199O-linked (GalNAc...).Swiss-Prot 53.0
206O-linked (GalNAc...).Swiss-Prot 53.0
208O-linked (GalNAc...).Swiss-Prot 53.0
210O-linked (GalNAc...).Swiss-Prot 53.0
222N-linked (GlcNAc...)(polylactosaminoglycan).Swiss-Prot 53.0
227N-linked (GlcNAc...)(polylactosaminoglycan).Swiss-Prot 53.0
240N-linked (GlcNAc...).Swiss-Prot 53.0
248N-linked (GlcNAc...).Swiss-Prot 53.0
260N-linked (GlcNAc...).Swiss-Prot 53.0
292N-linked (GlcNAc...).Swiss-Prot 53.0
321N-linked (GlcNAc...).Swiss-Prot 53.0
379N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
36N-linkedHMM predict
61N-linkedHMM predict
75N-linkedHMM predict
83N-linkedHMM predict
102N-linkedHMM predict
106N-linkedHMM predict
120N-linkedHMM predict
129N-linkedHMM predict
164N-linkedHMM predict
180N-linkedHMM predict
196O-linkedHMM predict
198O-linkedHMM predict
198O-linkedHMM predict
206O-linkedHMM predict
206Phosphoserine(IKK)HMM predict
208O-linkedHMM predict
208Phosphoserine(CDC2)HMM predict
210Phosphoserine(CDC2)HMM predict
210Phosphoserine(ATM)HMM predict
210Phosphoserine(CDK)HMM predict
215Phosphoserine(CDC2)HMM predict
217Phosphoserine(PKC)HMM predict
222N-linkedHMM predict
227N-linkedHMM predict
240N-linkedHMM predict
248N-linkedHMM predict
260N-linkedHMM predict
265O-linkedHMM predict
292N-linkedHMM predict
321N-linkedHMM predict
330O-linkedHMM predict
346Phosphothreonine(PKC)HMM predict
370Phosphoserine(IKK)HMM predict
379N-linkedHMM predict
409Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005561
  • Location:chr13 112999469-113025741
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 112998761 113000084 1323 47
Fos K562GSE19551 112999139 112999656 517 72
H3K4me3 colorectalcancer 112998886 112999060 174 497
HIF1 HypoHepG2 112998886 112999856 970 99
Oct1 H2O2-HelaGSE14283 112998889 112998929 40 561
Oct1 HelaGSE14283 112998815 112998859 44 633
Oct1 HelaGSE14283 112998893 112998935 42 556
P300 T30-glioblastomaGSE21026 112998942 112999967 1025 15
PHF8 HeLaGSE20725 112998634 113000072 1438 117
STAT1 IFNSISSRdata 112998816 112999866 1050 129
TFAP2C MCF7GSE21234 112994087 112994740 653 5056
USF1 HepG2E 112997171 112997587 416 2091
USF1 HepG2E 112998886 112999349 463 352
USF2 HepG2E 112997171 112997587 416 2091
USF2 HepG2E 112998886 112999275 389 389
VDR GM10861-UnstimGSE22484 112998703 112999994 1291 121
hScc1 BcellGSE12603 112998886 112999201 315 426
p130 QuiescentGSE19898 112998867 112999601 734 236
p130 SenescentGSE19898 112998906 112999520 614 257
p130 shRbQuiescentGSE19898 112998672 112999685 1013 291
p130 shRbSenescentGSE19898 112998862 112999602 740 238
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 113015874 113017182 1308 0
CTCF G2GSE9613 113021549 113021779 230 0
FOXA1 MCF7GSE15244 113015768 113017666 1898 0
H3ac HepG2E 113000047 113000879 832 0
Oct1 HelaGSE14283 113012375 113012408 33 0
PHF8 Hs68plusFBSGSE20725 112998765 113000738 1973 0
RARA MCF7GSE15244 113015768 113017666 1898 0
RARG MCF7GSE15244 113015768 113017553 1785 0
USF1 HepG2E 112999923 113001151 1228 0
USF1 HepG2E 113002207 113002464 257 0
USF1 HepG2E 113003163 113003343 180 0
USF2 HepG2E 113012023 113012200 177 0
hScc1 BcellGSE12603 113021584 113021984 400 0
hScc1 CdLSGSE12603 112999275 113000156 881 0
p63 keratinocytesGSE17611 113000572 113001539 967 0
p63 keratinocytesGSE17611 113007153 113008196 1043 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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