AutismKB 2.0

Annotation Detail for LCN2


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Basic Information Top
Gene Symbol:LCN2 ( 24p3,MSFI,NGAL )
Gene Full Name: lipocalin 2
Band: 9q34.11
Quick LinksEntrez ID:3934; OMIM: 600181; Uniprot ID:NGAL_HUMAN; ENSEMBL ID: ENSG00000148346; HGNC ID: 6526
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
21Pyrrolidone carboxylic acid.
85N-linked (GlcNAc...).
Location(AA) Modifications Resource
21Pyrrolidone carboxylic acid.Swiss-Prot 53.0
85N-linked (GlcNAc...).Swiss-Prot 53.0
Location(AA) Modification Resource
25Phosphoserine(CK1)HMM predict
34O-linkedHMM predict
84Phosphotyrosine(Syk)HMM predict
85N-linkedHMM predict
135Phosphotyrosine(Abl)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005564
  • Location:chr9 129951552-129955555
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 129954705 129955547 842 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-17 hsa-mir-17 13 19155294
hsa-miR-17* hsa-mir-17 13 19155294
hsa-miR-92a hsa-mir-92a-1 13 19155294
hsa-miR-92a hsa-mir-92a-2 X 19155294
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018