Annotation Detail for LFNG
Basic Information Top
| Gene Symbol: | LFNG ( SCDO3 ) |
|---|---|
| Gene Full Name: | LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
| Band: | 7p22.3 |
| Quick Links | Entrez ID:3955; OMIM: 602576; Uniprot ID:LFNG_HUMAN; ENSEMBL ID: ENSG00000106003; HGNC ID: 6560 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 167 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 167 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 73 | Phosphoserine(CK1) | HMM predict |
| 167 | N-linked | HMM predict |
| 204 | Phosphotyrosine(INSR) | HMM predict |
| 204 | Phosphotyrosine | HMM predict |
| 373 | Cysteine | HMM predict |
- RefSeq ID: NM_001040167
- Location:chr7 2526004-2534586
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 2506018 | 2506207 | 189 | 19892 |
| CTCF | G2 | GSE9613 | 2508133 | 2509006 | 873 | 17435 |
| CTCF | G2 | GSE9613 | 2509638 | 2510078 | 440 | 16147 |
| CTCF | G2 | GSE9613 | 2510880 | 2511904 | 1024 | 14613 |
| CTCF | G2 | GSE9613 | 2515159 | 2516271 | 1112 | 10290 |
| CTCF | G2 | GSE9613 | 2516580 | 2516943 | 363 | 9243 |
| CTCF | G2 | GSE9613 | 2518148 | 2519285 | 1137 | 7288 |
| CTCF | G2 | GSE9613 | 2524968 | 2526728 | 1760 | 157 |
| Fos | K562 | GSE19551 | 2525559 | 2526159 | 600 | 146 |
| NFkBII | GM18526 | GSE19485 | 2516758 | 2519174 | 2416 | 8039 |
| PHF8 | HeLa | GSE20725 | 2525210 | 2526636 | 1426 | 82 |
| TFAP2C | MCF7 | GSE21234 | 2517443 | 2517961 | 518 | 8303 |
| TFAP2C | MCF7 | GSE21234 | 2518755 | 2519745 | 990 | 6755 |
| TFAP2C | MCF7 | GSE21234 | 2519919 | 2520701 | 782 | 5695 |
| hScc1 | Bcell | GSE12603 | 2506509 | 2507015 | 506 | 19243 |
| hScc1 | Bcell | GSE12603 | 2507665 | 2508309 | 644 | 18018 |
| hScc1 | Bcell | GSE12603 | 2515490 | 2515776 | 286 | 10372 |
| hScc1 | Bcell | GSE12603 | 2517944 | 2518608 | 664 | 7729 |
| hScc1 | Bcell | GSE12603 | 2525483 | 2526408 | 925 | 59 |
| hScc1 | G2 | GSE9613 | 2508171 | 2508660 | 489 | 17589 |
| hScc1 | G2 | GSE9613 | 2515187 | 2515724 | 537 | 10549 |
| hScc1 | G2 | GSE9613 | 2525014 | 2526800 | 1786 | 98 |
| p130 | Quiescent | GSE19898 | 2525743 | 2525997 | 254 | 135 |
| p130 | shRbSenescent | GSE19898 | 2525844 | 2525995 | 151 | 85 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 2527202 | 2527740 | 538 | 0 |
| CTCF | G2 | GSE9613 | 2528118 | 2528516 | 398 | 0 |
| CTCF | G2 | GSE9613 | 2529349 | 2530600 | 1251 | 0 |
| CTCF | G2 | GSE9613 | 2531284 | 2531878 | 594 | 0 |
| CTCF | G2 | GSE9613 | 2532155 | 2533138 | 983 | 0 |
| CTCF | G2 | GSE9613 | 2533579 | 2533818 | 239 | 0 |
| ER | MCF7 | GSE19013 | 2529592 | 2531151 | 1559 | 0 |
| FoxA1 | MCF7 | MACSdata | 2530261 | 2530643 | 382 | 0 |
| NFkBII | GM12878 | GSE19485 | 2527641 | 2528955 | 1314 | 0 |
| NFkBII | GM18526 | GSE19485 | 2527691 | 2528940 | 1249 | 0 |
| Rb | shRbSenescence | GSE19898 | 2526501 | 2526646 | 145 | 0 |
| TFAP2C | MCF7 | GSE21234 | 2526467 | 2527407 | 940 | 0 |
| TFAP2C | MCF7 | GSE21234 | 2528629 | 2530924 | 2295 | 0 |
| TFAP2C | MCF7 | GSE21234 | 2533438 | 2534821 | 1383 | 0 |
Validated miRNA targets