Annotation Detail for LGALS1

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Basic Information Top

Gene Symbol:	LGALS1 ( DKFZp686E23103,GAL1,GBP )
Gene Full Name:	lectin, galactoside-binding, soluble, 1
Band:	22q13.1
Quick Links	Entrez ID:3956; OMIM: 150570; Uniprot ID:LEG1_HUMAN; ENSEMBL ID: ENSG00000100097; HGNC ID: 6561
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:3 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:3 results

Location(AA)	Modification
2	N-acetylalanine.
29	N6-acetyllysine.
105	Phosphotyrosine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_002305
Location:chr22 36401558-36405752
strand:+

Upstream the gene:13 results
Downstream the gene:8 results
Inside the gene:1 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	36398279	36398428	149	3205
CTCF	CD4	SISSRdata	36398279	36398428	149	3205
Rb	Growing	GSE19898	36401088	36401520	432	255
Rb	Quiescent	GSE19898	36400890	36401407	517	410
Rb	Senescent	GSE19898	36400939	36401477	538	351
Rb	shRbQuiescent	GSE19898	36400999	36401430	431	344
Rb	shRbSenescence	GSE19898	36400951	36401388	437	389
TFAP2C	MCF7	GSE21234	36400808	36401535	727	387
hScc1	Bcell	GSE12603	36400873	36401311	438	467
p130	Quiescent	GSE19898	36401004	36401497	493	308
p130	Senescent	GSE19898	36400945	36401984	1039	94
p130	shRbQuiescent	GSE19898	36400732	36401404	672	491
p130	shRbSenescent	GSE19898	36400811	36401833	1022	237

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	36407521	36407807	286	1912
CTCF	CD4	SISSRdata	36407521	36407807	286	1912
CTCF	Hela	GSE12889	36407549	36407989	440	2017
CTCF	Jurkat	GSE12889	36407493	36407937	444	1963
CTCF	G2	GSE9613	36407316	36407814	498	1813
RARA	MCF7	GSE15244	36407156	36407814	658	1733
hScc1	Bcell	GSE12603	36407278	36407814	536	1794
hScc1	CdLS	GSE12603	36407336	36407814	478	1823

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
NFkBII	GM12878	GSE19485	36400824	36403426	2602	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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