AutismKB 2.0

Annotation Detail for SNX19


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Basic Information Top
Gene Symbol:SNX19 ( CHET8,DKFZp667I205,KIAA0254 )
Gene Full Name: sorting nexin 19
Band: 11q24.3-q25
Quick LinksEntrez ID:399979; OMIM: NA; Uniprot ID:SNX19_HUMAN; ENSEMBL ID: ENSG00000120451; HGNC ID: 21532
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
103N-linkedHMM predict
147Phosphoserine(PKB)HMM predict
147Phosphoserine(PKG)HMM predict
147Phosphoserine(PKA)HMM predict
147PhosphoserineHMM predict
204Phosphoserine(MAPK)HMM predict
206O-linkedHMM predict
286Phosphoserine(IKK)HMM predict
286O-linkedHMM predict
306PhosphoserineHMM predict
306Phosphoserine(CDC2)HMM predict
322O-linkedHMM predict
351N-linkedHMM predict
352N-linkedHMM predict
371Phosphoserine(CK2)HMM predict
375Phosphoserine(MAPK)HMM predict
392Phosphoserine(IKK)HMM predict
408Phosphoserine(ATM)HMM predict
504O-linkedHMM predict
506Phosphoserine(CDC2)HMM predict
506O-linkedHMM predict
506Phosphoserine(ATM)HMM predict
506Phosphoserine(IKK)HMM predict
523Phosphoserine(CDC2)HMM predict
567N-linkedHMM predict
583Phosphotyrosine(EGFR)HMM predict
631Phosphoserine(IKK)HMM predict
631Phosphoserine(PKG)HMM predict
699Phosphoserine(IKK)HMM predict
699Phosphoserine(MAPK)HMM predict
699Phosphoserine(CDC2)HMM predict
705Phosphoserine(CK2)HMM predict
711Phosphoserine(CK1)HMM predict
711Phosphoserine(IKK)HMM predict
715Phosphothreonine(PKC)HMM predict
721Phosphoserine(CAMK2)HMM predict
728Phosphoserine(CDC2)HMM predict
737Phosphoserine(CK1)HMM predict
753Phosphoserine(CK2)HMM predict
760Phosphoserine(IKK)HMM predict
810Phosphoserine(IKK)HMM predict
812O-linkedHMM predict
812Phosphoserine(CK1)HMM predict
866N-linkedHMM predict
968Phosphoserine(CK2)HMM predict
972Phosphoserine(IKK)HMM predict
975O-linkedHMM predict
976O-linkedHMM predict
977O-linkedHMM predict
977O-linkedHMM predict
977O-linkedHMM predict
977Phosphoserine(IKK)HMM predict
979O-linkedHMM predict
981Phosphothreonine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014758
  • Location:chr11 130250984-130291571
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 130291522 130291907 385 143
CTCF CD4GSE12889 130298461 130298688 227 7003
CTCF CD4SISSRdata 130291522 130291907 385 143
CTCF CD4SISSRdata 130298461 130298688 227 7003
CTCF JurkatGSE12889 130291534 130291811 277 101
CTCF JurkatGSE12889 130298355 130298727 372 6970
Rb QuiescentGSE19898 130298515 130298627 112 7000
hScc1 CdLSGSE12603 130298435 130298832 397 7062
hScc1 G2GSE9613 130298435 130298873 438 7083
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 130236986 130237455 469 13764
CTCF CD4SISSRdata 130236986 130237455 469 13764
Fos K562GSE19551 130233199 130233770 571 17500
KLF4 hESGSE17917 130235378 130235546 168 15523
Myc K562GSE19551 130237017 130237548 531 13702
TAFII hESGSE17917 130237135 130237391 256 13722
hScc1 BcellGSE12603 130236221 130237500 1279 14124
hScc1 CdLSGSE12603 130236486 130237743 1257 13870
hScc1 G2GSE9613 130236450 130237605 1155 13957
p130 SenescentGSE19898 130247828 130248083 255 3029
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 130269508 130269920 412 0
CTCF CD4SISSRdata 130269508 130269920 412 0
CTCF HelaGSE12889 130269584 130269787 203 0
CTCF JurkatGSE12889 130279656 130279789 133 0
ETS1 JurkatGSE17954 130291022 130291926 904 0
FOXA1 MCF7GSE15244 130272443 130272897 454 0
P300 T30-glioblastomaGSE21026 130271972 130273597 1625 0
RARA MCF7GSE15244 130271926 130273592 1666 0
RARG MCF7GSE15244 130271926 130273232 1306 0
hScc1 BcellGSE12603 130269427 130269874 447 0
hScc1 BcellGSE12603 130291312 130291682 370 0
hScc1 CdLSGSE12603 130269391 130270471 1080 0
hScc1 G2GSE9613 130269427 130269912 485 0
p130 shRbQuiescentGSE19898 130272499 130273085 586 0
p130 shRbQuiescentGSE19898 130290572 130291526 954 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-376a hsa-mir-376a-1 0 17322061
hsa-miR-376a hsa-mir-376a-2 0 17322061
hsa-miR-376a* hsa-mir-376a-1 0 17322061
hsa-miR-376b hsa-mir-376b 0 17322061
hsa-miR-376c hsa-mir-376c 0 17322061
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
95 mRNA repression TRUE Edited-miR-376a-5p SNX19 in vitro reporter gene assay (Luciferase) 17322061
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000120451 n_a n_a n_a "epithelium, lymphoblast, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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