AutismKB 2.0

Annotation Detail for LMO2


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Basic Information Top
Gene Symbol:LMO2 ( RBTN2,RBTNL1,RHOM2,TTG2 )
Gene Full Name: LIM domain only 2 (rhombotin-like 1)
Band: 11p13
Quick LinksEntrez ID:4005; OMIM: 180385; Uniprot ID:RBTN2_HUMAN; ENSEMBL ID: ENSG00000135363; HGNC ID: 6642
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
56Phosphoserine(IKK)HMM predict
60S-palmitoylHMM predict
125S-palmitoylHMM predict
149Phosphotyrosine(SRC)HMM predict
149Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005574
  • Location:chr11 33836698-33870411
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 33889136 33889210 74 18762
hScc1 BcellGSE12603 33871890 33872264 374 1666
hScc1 CdLSGSE12603 33873044 33873257 213 2739
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 33835955 33836355 400 544
CTCF CD4SISSRdata 33835955 33836355 400 544
hScc1 BcellGSE12603 33835736 33836621 885 520
hScc1 CdLSGSE12603 33835736 33836621 885 520
hScc1 G2GSE9613 33835736 33836687 951 487
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 DLD1GSE12801 33863456 33863818 362 0
H3K27me3 colorectalcancer 33848907 33849298 391 0
H3K4me3 colorectalcancer 33846590 33846919 329 0
KLF4 hESGSE17917 33847633 33848071 438 0
Myc K562GSE19551 33863276 33864003 727 0
NRSF pAbJurkat 33842981 33843353 372 0
RNAII Tamoxifen-MCF7GSE14664 33855338 33855433 95 0
TAF k562GSE8489 33848153 33849298 1145 0
TFAP2C MCF7GSE21234 33863494 33863964 470 0
hScc1 BcellGSE12603 33847132 33848054 922 0
hScc1 BcellGSE12603 33869532 33869922 390 0
hScc1 CdLSGSE12603 33847026 33848091 1065 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-125b hsa-mir-125b-1 11 19047678
hsa-miR-125b hsa-mir-125b-2 21 19047678
hsa-miR-125b-1* hsa-mir-125b-1 11 19047678
hsa-miR-142-3p hsa-mir-142 17 17972953
hsa-miR-142-5p hsa-mir-142 17 17972953
hsa-miR-223 hsa-mir-223 X 19278969
hsa-miR-223 hsa-mir-223 X 19047678
hsa-miR-223 hsa-mir-223 X 19017354
hsa-miR-223* hsa-mir-223 X 19278969
hsa-miR-223* hsa-mir-223 X 19047678
hsa-miR-223* hsa-mir-223 X 19017354
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4293 HTC PRO1483 chr11 33851316 33853117 1801 mRNA LMO2 chr11 33836700 33870412 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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