AutismKB 2.0

Annotation Detail for LMO7


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Basic Information Top
Gene Symbol:LMO7 ( FBX20,FBXO20,KIAA0858,LOMP )
Gene Full Name: LIM domain 7
Band: 13q22.2
Quick LinksEntrez ID:4008; OMIM: 604362; Uniprot ID:LMO7_HUMAN; ENSEMBL ID: ENSG00000136153; HGNC ID: 6646
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
185Phosphotyrosine.
246Phosphoserine.
276Phosphoserine.
322Phosphoserine.
323Phosphotyrosine.
342Phosphoserine.
345Phosphoserine.
584Phosphoserine.
704Phosphoserine.
706Phosphoserine.
709Phosphoserine.
805Phosphoserine.
867Phosphoserine.
873Phosphoserine.
895Phosphoserine.
913Phosphothreonine.
919Phosphoserine.
926Phosphoserine.
932Phosphothreonine.
949Phosphothreonine.
955Phosphoserine.
956Phosphothreonine.
960Phosphoserine.
988Phosphoserine.
991Phosphoserine.
994Phosphoserine.
995Phosphoserine.
1026Phosphoserine.
1044Phosphoserine.
1048Phosphothreonine.
1197Phosphoserine.
1423Phosphoserine.
1493Phosphoserine.
1510Phosphoserine.
1516Phosphoserine.
1563Phosphoserine.
1586Phosphoserine.
1588Phosphothreonine.
1593Phosphoserine.
1595Phosphoserine.
1597Phosphoserine.
1601Phosphoserine.
1672Phosphotyrosine.
Location(AA) Modifications Resource
246Phosphoserine.Swiss-Prot 53.0
342Phosphoserine.Swiss-Prot 53.0
805PhosphoserinePhospho.ELM 6.0
805Phosphoserine.Swiss-Prot 53.0
867Phosphoserine.Swiss-Prot 53.0
867PhosphoserinePhospho.ELM 6.0
895PhosphoserinePhospho.ELM 6.0
895Phosphoserine.Swiss-Prot 53.0
960PhosphoserinePhospho.ELM 6.0
960Phosphoserine.Swiss-Prot 53.0
988PhosphoserinePhospho.ELM 6.0
988Phosphoserine.Swiss-Prot 53.0
990PhosphothreoninePhospho.ELM 6.0
991PhosphoserinePhospho.ELM 6.0
991Phosphoserine.Swiss-Prot 53.0
994PhosphoserinePhospho.ELM 6.0
1026Phosphoserine.Swiss-Prot 53.0
1026PhosphoserinePhospho.ELM 6.0
1044Phosphoserine.Swiss-Prot 53.0
1048Phosphothreonine.Swiss-Prot 53.0
1048PhosphothreoninePhospho.ELM 6.0
1493Phosphoserine.Swiss-Prot 53.0
1493PhosphoserinePhospho.ELM 6.0
1510PhosphoserinePhospho.ELM 6.0
1510Phosphoserine.Swiss-Prot 53.0
1586Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
185Phosphotyrosine(Jak)HMM predict
246Phosphoserine(IKK)HMM predict
260Phosphoserine(IKK)HMM predict
276Phosphoserine(CK2)HMM predict
300Phosphoserine(PKA)HMM predict
300Phosphoserine(PKG)HMM predict
316N-linkedHMM predict
376O-linkedHMM predict
390Phosphothreonine(PKC)HMM predict
407Phosphoserine(CDC2)HMM predict
468Phosphoserine(CK1)HMM predict
545Phosphoserine(CK1)HMM predict
584Phosphoserine(CK2)HMM predict
584Phosphoserine(ATM)HMM predict
658O-linkedHMM predict
700N-linkedHMM predict
706Phosphoserine(CK1)HMM predict
751Phosphoserine(PKG)HMM predict
752Phosphotyrosine(PKG)HMM predict
777Phosphoserine(PKG)HMM predict
790Phosphoserine(CK1)HMM predict
790Phosphoserine(ATM)HMM predict
799Phosphoserine(PKC)HMM predict
825Phosphoserine(CK2)HMM predict
826Phosphotyrosine(SRC)HMM predict
876Phosphoserine(MAPK)HMM predict
885Phosphothreonine(PKC)HMM predict
913Phosphothreonine(MAPK)HMM predict
949Phosphothreonine(CDC2)HMM predict
955O-linkedHMM predict
955O-linkedHMM predict
955O-linkedHMM predict
956O-linkedHMM predict
960Phosphoserine(CDC2)HMM predict
964Phosphoserine(ATM)HMM predict
969Phosphoserine(CK1)HMM predict
972Phosphoserine(CK1)HMM predict
972Phosphoserine(ATM)HMM predict
984O-linkedHMM predict
988Phosphoserine(CDC2)HMM predict
988Phosphoserine(IKK)HMM predict
991Phosphoserine(CDC2)HMM predict
991Phosphoserine(IKK)HMM predict
995O-linkedHMM predict
997Phosphoserine(ATM)HMM predict
1007O-linkedHMM predict
1018Phosphoserine(CK1)HMM predict
1020Phosphoserine(CK2)HMM predict
1020PhosphoserineHMM predict
1034Phosphoserine(ATM)HMM predict
1046N-linkedHMM predict
1048Phosphothreonine(MAPK)HMM predict
1092N-linkedHMM predict
1093N-linkedHMM predict
1099N-linkedHMM predict
1101PhosphoserineHMM predict
1149N-linkedHMM predict
1151Phosphoserine(CK1)HMM predict
1159Phosphoserine(CK2)HMM predict
1189Phosphoserine(CK1)HMM predict
1207Phosphoserine(ATM)HMM predict
1272Phosphoserine(CK1)HMM predict
1274Phosphotyrosine(INSR)HMM predict
1274Phosphotyrosine(Syk)HMM predict
1286Phosphoserine(IKK)HMM predict
1288Phosphoserine(CK1)HMM predict
1290Phosphothreonine(PKC)HMM predict
1312MethylarginineHMM predict
1419N-linkedHMM predict
1424Phosphothreonine(PKA)HMM predict
1430Phosphotyrosine(INSR)HMM predict
1446N-linkedHMM predict
1454Phosphoserine(PKG)HMM predict
1454Phosphoserine(CK1)HMM predict
1478Phosphothreonine(PKA)HMM predict
1478Phosphothreonine(CDK)HMM predict
1491Phosphoserine(PKG)HMM predict
1493Phosphoserine(PKB)HMM predict
1516Phosphoserine(CDC2)HMM predict
1521Phosphoserine(IKK)HMM predict
1521Phosphoserine(PKB)HMM predict
1561N-linkedHMM predict
1563O-linkedHMM predict
1564O-linkedHMM predict
1565O-linkedHMM predict
1565Phosphoserine(ATM)HMM predict
1570O-linkedHMM predict
1573O-linkedHMM predict
1576O-linkedHMM predict
1577O-linkedHMM predict
1584O-linkedHMM predict
1584O-linkedHMM predict
1584O-linkedHMM predict
1586Phosphoserine(CDC2)HMM predict
1588O-linkedHMM predict
1588O-linkedHMM predict
1588Phosphothreonine(MAPK)HMM predict
1593Phosphoserine(CDC2)HMM predict
1593Phosphoserine(IKK)HMM predict
1595O-linkedHMM predict
1597Phosphoserine(ATM)HMM predict
1599Phosphoserine(IKK)HMM predict
1601Phosphoserine(IKK)HMM predict
1607Phosphoserine(CAMK2)HMM predict
1635S-palmitoylHMM predict
1668CysteineHMM predict
1675PhenylalanineHMM predict
1676PhenylalanineHMM predict
1677PhenylalanineHMM predict
1678PhenylalanineHMM predict
1680ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005358
  • Location:chr13 75092570-75332001
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 75092147 75092323 176 336
TFAP2C MCF7GSE21234 75089275 75089907 632 2980
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 75348600 75348803 203 16700
CTCF CD4SISSRdata 75348600 75348803 203 16700
CTCF G2GSE9613 75332719 75332870 151 793
CTCF G2GSE9613 75342459 75343040 581 10748
ER E2-MCF7GSE14664 75332214 75332263 49 237
Myc K562GSE19551 75348532 75348910 378 16720
Oct1 HelaGSE14283 75332217 75332270 53 242
hScc1 BcellGSE12603 75342459 75342958 499 10707
hScc1 CdLSGSE12603 75342459 75342994 535 10725
hScc1 CdLSGSE12603 75348285 75348522 237 16402
hScc1 G2GSE9613 75342459 75342994 535 10725
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 75167906 75168244 338 0
CTCF CD4SISSRdata 75167906 75168244 338 0
CTCF G2GSE9613 75107470 75108557 1087 0
CTCF G2GSE9613 75146568 75146856 288 0
CTCF G2GSE9613 75163779 75163997 218 0
CTCF G2GSE9613 75167943 75168185 242 0
CTCF G2GSE9613 75177281 75177420 139 0
CTCF G2GSE9613 75287082 75287396 314 0
CTCF G2GSE9613 75313886 75314249 363 0
FoxA1 MCF7MACSdata 75163384 75163643 259 0
Nanog ESGSE20650 75205090 75205324 234 0
Oct1 H2O2-HelaGSE14283 75106764 75106795 31 0
Oct1 H2O2-HelaGSE14283 75178196 75178253 57 0
Oct1 H2O2-HelaGSE14283 75330703 75330732 29 0
Oct1 HelaGSE14283 75178222 75178251 29 0
Oct1 HelaGSE14283 75296576 75296626 50 0
Pol3 GM12878GSE19551 75304649 75304998 349 0
PolII HeLaGSE12783 75232146 75236130 3984 0
RARA MCF7GSE15244 75234432 75234904 472 0
STAT1 HeLaGSE12783 75167688 75168684 996 0
STAT1 IFNSISSRdata 75167801 75168561 760 0
TFAP2C MCF7GSE21234 75108680 75109172 492 0
TFAP2C MCF7GSE21234 75177020 75177448 428 0
USF1 HepG2E 75264576 75265379 803 0
USF2 HepG2E 75264576 75265379 803 0
hScc1 BcellGSE12603 75107470 75108347 877 0
hScc1 BcellGSE12603 75146526 75146927 401 0
hScc1 BcellGSE12603 75167906 75168185 279 0
hScc1 CdLSGSE12603 75108457 75109289 832 0
hScc1 CdLSGSE12603 75146568 75146856 288 0
hScc1 CdLSGSE12603 75167869 75168185 316 0
hScc1 G2GSE9613 75107541 75108593 1052 0
hScc1 G2GSE9613 75167795 75168185 390 0
p130 QuiescentGSE19898 75105425 75105621 196 0
p130 shRbSenescentGSE19898 75108577 75109044 467 0
p63 keratinocytesGSE17611 75138559 75139539 980 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7332 mRNA LMO7 chr13 75092570 75332002 199 EST chr13 75272760 75277836Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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