AutismKB 2.0

Annotation Detail for C9orf139


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Basic Information Top
Gene Symbol:C9orf139 ( FLJ36268,FLJ42909 )
Gene Full Name: chromosome 9 open reading frame 139
Band: 9q34.3
Quick LinksEntrez ID:401563; OMIM: NA; Uniprot ID:CI139_HUMAN; ENSEMBL ID: ENSG00000180539; HGNC ID: 31426
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
12O-linkedHMM predict
14Phosphothreonine(MAPK)HMM predict
14O-linkedHMM predict
17O-linkedHMM predict
34Phosphoserine(IKK)HMM predict
75Phosphothreonine(PKA)HMM predict
105Phosphoserine(IKK)HMM predict
160N-linkedHMM predict
164Phosphoserine(CK1)HMM predict
181PhosphoserineHMM predict
183O-linkedHMM predict
184O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_207511
  • Location:chr9 139041736-139051054
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 139043579 139044052 473 0
CTCF CD4GSE12889 139049551 139049852 301 0
CTCF CD4SISSRdata 139049551 139049852 301 0
CTCF HelaGSE12889 139049590 139049798 208 0
CTCF JurkatGSE12889 139049534 139049883 349 0
PHF8 HeLaGSE20725 139040962 139043421 2459 0
TFAP2C MCF7GSE21234 139043683 139044104 421 0
TFAP2C MCF7GSE21234 139048667 139049098 431 0
TFAP2C MCF7GSE21234 139049348 139050235 887 0
hScc1 BcellGSE12603 139042754 139043427 673 0
hScc1 BcellGSE12603 139049458 139049950 492 0
hScc1 CdLSGSE12603 139042754 139043564 810 0
hScc1 CdLSGSE12603 139049207 139050285 1078 0
hScc1 G2GSE9613 139049364 139050758 1394 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
27249 mRNA FLJ36268 chr9 137197752 137207071 1013 mRNA FUT7 chr9 137200462 137203299Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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