AutismKB 2.0

Annotation Detail for LSAMP


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:LSAMP ( FLJ34254,FLJ35396,FLJ37216,FLJ54658,IGLON3,LAMP )
Gene Full Name: limbic system-associated membrane protein
Band: 3q13.31
Quick LinksEntrez ID:4045; OMIM: 603241; Uniprot ID:LSAMP_HUMAN; ENSEMBL ID: ENSG00000185565; HGNC ID: 6705
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
40N-linked (GlcNAc...) (Potential).
66N-linked (GlcNAc...) (Potential).
94Phosphotyrosine (By similarity).
136N-linked (GlcNAc...) (Potential).
148N-linked (GlcNAc...) (Potential).
279N-linked (GlcNAc...) (Potential).
287N-linked (GlcNAc...) (Potential).
300N-linked (GlcNAc...).
315N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
40N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
66N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
136N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
148N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
279N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
287N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
300N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
315GPI-anchor amidated asparagine(Potential).Swiss-Prot 53.0
315N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
40N-linkedHMM predict
60Phosphoserine(CK1)HMM predict
66N-linkedHMM predict
125Phosphotyrosine(Jak)HMM predict
135O-linkedHMM predict
136N-linkedHMM predict
148N-linkedHMM predict
169Phosphothreonine(CDK)HMM predict
181Phosphotyrosine(Syk)HMM predict
181Phosphotyrosine(EGFR)HMM predict
226Phosphoserine(IKK)HMM predict
274O-linkedHMM predict
279N-linkedHMM predict
285Phosphotyrosine(SRC)HMM predict
285SulfotyrosineHMM predict
287N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002338
  • Location:chr3 117011839-117647067
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 117659816 117659844 28 12763
Oct1 HelaGSE14283 117659813 117659846 33 12762
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 116992215 116992729 514 19368
H3ac HepG2E 116991498 116992834 1336 19674
Jun K562GSE19551 116992300 116992688 388 19346
Myc K562GSE19551 116992368 116992699 331 19306
P300 T30-glioblastomaGSE21026 116991793 116992993 1200 19447
P300 T30-glioblastomaGSE21026 117001720 117002729 1009 9615
Rb SenescentGSE19898 116992365 116992731 366 19292
STAT1 HeLaGSE12783 117005838 117007116 1278 5363
STAT1 IFNSISSRdata 117006010 117007051 1041 5309
p130 QuiescentGSE19898 116992291 116992481 190 19454
p130 SenescentGSE19898 116992267 116992721 454 19346
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 117232587 117233131 544 0
CBP T30-glioblastomaGSE21026 117232748 117233377 629 0
CTCF CD4GSE12889 117016316 117016758 442 0
CTCF CD4GSE12889 117021264 117021631 367 0
CTCF CD4GSE12889 117038597 117038771 174 0
CTCF CD4SISSRdata 117016316 117016758 442 0
CTCF CD4SISSRdata 117021264 117021631 367 0
CTCF CD4SISSRdata 117038597 117038771 174 0
CTCF G2GSE9613 117016202 117016573 371 0
CTCF G2GSE9613 117020986 117022156 1170 0
CTCF G2GSE9613 117038553 117039250 697 0
CTCF G2GSE9613 117062829 117063232 403 0
CTCF G2GSE9613 117069089 117069268 179 0
CTCF G2GSE9613 117114735 117114985 250 0
CTCF G2GSE9613 117124296 117124639 343 0
CTCF G2GSE9613 117235435 117235845 410 0
CTCF G2GSE9613 117341633 117341944 311 0
ER Fulvestrant-MCF7GSE14664 117172378 117172413 35 0
FOXA1 MCF7GSE15244 117330685 117331449 764 0
Fos K562GSE19551 117201655 117202384 729 0
KLF4 hESGSE17917 117285154 117285321 167 0
Myc K562GSE19551 117021378 117021737 359 0
NFkBII GM12878GSE19485 117201354 117202812 1458 0
NFkBII GM12878GSE19485 117540647 117544958 4311 0
NRSF JurkatGSE13047 117086990 117087922 932 0
NRSF mAbJurkat 117059559 117062420 2861 0
NRSF mAbJurkat 117083821 117087550 3729 0
NRSF mAbJurkat 117087958 117090884 2926 0
NRSF-mono JurkatQuESTdata 117060361 117060966 605 0
NRSF-mono JurkatQuESTdata 117086989 117087897 908 0
NRSF-mono JurkatQuESTdata 117088171 117088339 168 0
NRSF-poly JurkatQuESTdata 117060455 117060932 477 0
NRSF-poly JurkatQuESTdata 117087031 117087751 720 0
Nanog ESGSE20650 117261201 117261678 477 0
Nanog hESGSE18292 117549867 117550145 278 0
Oct1 H2O2-HelaGSE14283 117236276 117236309 33 0
Oct1 H2O2-HelaGSE14283 117242276 117242320 44 0
Oct1 H2O2-HelaGSE14283 117260935 117260962 27 0
Oct1 H2O2-HelaGSE14283 117301725 117301759 34 0
Oct1 HelaGSE14283 117012825 117012854 29 0
Oct1 HelaGSE14283 117172376 117172414 38 0
Oct1 HelaGSE14283 117188054 117188091 37 0
Oct1 HelaGSE14283 117236271 117236309 38 0
Oct1 HelaGSE14283 117242282 117242319 37 0
Oct1 HelaGSE14283 117260929 117260981 52 0
Oct1 HelaGSE14283 117431900 117431942 42 0
Oct1 HelaGSE14283 117432010 117432040 30 0
Oct1 HelaGSE14283 117484748 117484775 27 0
Oct1 HelaGSE14283 117532074 117532105 31 0
P300 T0-glioblastomaGSE21026 117232915 117233128 213 0
P300 T30-glioblastomaGSE21026 117176756 117177605 849 0
P300 T30-glioblastomaGSE21026 117201301 117202320 1019 0
P300 T30-glioblastomaGSE21026 117232940 117233131 191 0
P300 T30-glioblastomaGSE21026 117380366 117381230 864 0
STAT1 HeLaGSE12783 117206585 117207523 938 0
hScc1 BcellGSE12603 117016270 117016573 303 0
hScc1 CdLSGSE12603 117016306 117016573 267 0
hScc1 CdLSGSE12603 117341560 117342148 588 0
hScc1 G2GSE9613 117016097 117016573 476 0
hScc1 G2GSE9613 117124296 117124639 343 0
hScc1 G2GSE9613 117341633 117342286 653 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-1 hsa-mir-1-2 18 19586368
hsa-miR-1 hsa-mir-1-1 20 19586368
hsa-miR-133a hsa-mir-133a-1 18 19586368
hsa-miR-133a hsa-mir-133a-2 20 19586368
hsa-miR-133b hsa-mir-133b 6 19586368
hsa-miR-206 hsa-mir-206 6 19586368
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved