AutismKB 2.0

Annotation Detail for LTBP3


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Basic Information Top
Gene Symbol:LTBP3 ( DKFZp586M2123,FLJ33431,FLJ39893,FLJ42533,FLJ44138,FLJ45576,LTBP-3,LTBP2,STHAG6,pp6425 )
Gene Full Name: latent transforming growth factor beta binding protein 3
Band: 11q13.1
Quick LinksEntrez ID:4054; OMIM: 602090; Uniprot ID:LTBP3_HUMAN; ENSEMBL ID: ENSG00000168056; HGNC ID: 6716
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
89N-linked (GlcNAc...) (Potential).
349N-linked (GlcNAc...) (Potential).
845N-linked (GlcNAc...) (Potential).
936N-linked (GlcNAc...) (Potential).
1275N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
89N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
349N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
845N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
936N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1275N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
16MethylarginineHMM predict
89N-linkedHMM predict
247Phosphoserine(CK2)HMM predict
266O-linkedHMM predict
266O-linkedHMM predict
272Phosphothreonine(PKC)HMM predict
316S-palmitoylHMM predict
349N-linkedHMM predict
386O-linkedHMM predict
428S-palmitoylHMM predict
429S-palmitoylHMM predict
430S-palmitoylHMM predict
496Phosphoserine(ATM)HMM predict
496Phosphoserine(CDC2)HMM predict
498Phosphoserine(ATM)HMM predict
498Phosphoserine(IKK)HMM predict
498O-linkedHMM predict
506PhosphothreonineHMM predict
506Phosphothreonine(CK2)HMM predict
513Phosphothreonine(PKC)HMM predict
516Phosphoserine(CDC2)HMM predict
523Phosphoserine(CK1)HMM predict
530O-linkedHMM predict
530O-linkedHMM predict
532O-linkedHMM predict
532O-linkedHMM predict
533O-linkedHMM predict
534Phosphothreonine(CDK)HMM predict
534Phosphothreonine(CDC2)HMM predict
544O-linkedHMM predict
547Phosphoserine(IKK)HMM predict
712Phosphoserine(IKK)HMM predict
730S-palmitoylHMM predict
752Phosphoserine(IKK)HMM predict
803Phosphothreonine(MAPK)HMM predict
822Phosphoserine(IKK)HMM predict
845N-linkedHMM predict
871Phosphoserine(ATM)HMM predict
875Phosphoserine(IKK)HMM predict
936N-linkedHMM predict
962Phosphotyrosine(SRC)HMM predict
1063Phosphothreonine(CDC2)HMM predict
1068Phosphotyrosine(SRC)HMM predict
1077Phosphoserine(CDC2)HMM predict
1077Phosphoserine(IKK)HMM predict
1126Phosphoserine(CDC2)HMM predict
1184O-linkedHMM predict
1189Phosphoserine(ATM)HMM predict
1191Phosphoserine(IKK)HMM predict
1213Phosphoserine(CK2)HMM predict
1213Phosphoserine(CK1)HMM predict
1214Phosphoserine(CK1)HMM predict
1275N-linkedHMM predict
1282S-palmitoylHMM predict
1292ArginineHMM predict
1297CysteineHMM predict
1297S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021070
  • Location:chr11 65062851-65082005
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 65084727 65085200 473 2958
H3ac HepG2E 65083261 65084727 1466 1989
NRSF pAbJurkat 65082110 65082425 315 262
Oct1 HelaGSE14283 65087557 65087596 39 5571
RARG MCF7GSE15244 65084130 65085200 1070 2660
Rb SenescentGSE19898 65082079 65082495 416 282
TFAP2C MCF7GSE21234 65084018 65084647 629 2327
hScc1 BcellGSE12603 65082110 65082613 503 356
hScc1 G2GSE9613 65082110 65082613 503 356
p130 SenescentGSE19898 65083977 65084441 464 2204
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 65079532 65080706 1174 0
CTCF CD4GSE12889 65076185 65076493 308 0
CTCF CD4SISSRdata 65076185 65076493 308 0
FOXA1 MCF7GSE15244 65065663 65066393 730 0
FOXA1 MCF7GSE15244 65070873 65071087 214 0
FOXA1 MCF7GSE15244 65074956 65076335 1379 0
H3ac HepG2E 65068302 65070272 1970 0
H3ac HepG2E 65080610 65081620 1010 0
NRSF pAbJurkat 65067423 65068186 763 0
NRSF pAbJurkat 65079035 65080252 1217 0
Oct1 H2O2-HelaGSE14283 65072339 65072366 27 0
Oct1 H2O2-HelaGSE14283 65081434 65081464 30 0
P300 T30-glioblastomaGSE21026 65079557 65080578 1021 0
RARA MCF7GSE15244 65075322 65076676 1354 0
RARA MCF7GSE15244 65079910 65080252 342 0
RARG MCF7GSE15244 65075188 65076796 1608 0
RARG MCF7GSE15244 65079946 65080252 306 0
TFAP2C MCF7GSE21234 65064316 65065307 991 0
TFAP2C MCF7GSE21234 65065435 65066232 797 0
TFAP2C MCF7GSE21234 65074818 65075736 918 0
TFAP2C MCF7GSE21234 65077146 65077790 644 0
TFAP2C MCF7GSE21234 65079584 65080292 708 0
USF1 HepG2E 65074956 65077195 2239 0
USF2 HepG2E 65075612 65076301 689 0
VDR GM10861-stimGSE22484 65075546 65077154 1608 0
hScc1 BcellGSE12603 65063539 65065379 1840 0
hScc1 BcellGSE12603 65070509 65071022 513 0
hScc1 BcellGSE12603 65076101 65076759 658 0
hScc1 BcellGSE12603 65081453 65081809 356 0
hScc1 CdLSGSE12603 65063814 65065337 1523 0
hScc1 CdLSGSE12603 65075690 65076605 915 0
hScc1 G2GSE9613 65062923 65065663 2740 0
p130 SenescentGSE19898 65079926 65080202 276 0
p130 SenescentGSE19898 65081466 65081640 174 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4701 mRNA SCYL1 chr11 65049158 65062750 144 HTC LTBP3 chr11 65062606 65077910Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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