AutismKB 2.0

Annotation Detail for TM4SF1


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Basic Information Top
Gene Symbol:TM4SF1 ( H-L6,L6,M3S1,TAAL6 )
Gene Full Name: transmembrane 4 L six family member 1
Band: 3q25.1
Quick LinksEntrez ID:4071; OMIM: 191155; Uniprot ID:T4S1_HUMAN; ENSEMBL ID: ENSG00000169908; HGNC ID: 11853
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
129N-linked (GlcNAc...) (Potential).
159N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
129N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
159N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
37Phosphotyrosine(INSR)HMM predict
76S-palmitoylHMM predict
129N-linkedHMM predict
146C-linkedHMM predict
159N-linkedHMM predict
195SerineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014220
  • Location:chr3 150569494-150578257
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 150577882 150579082 1200 225
FOXA1 MCF7GSE15244 150586800 150588145 1345 9215
FOXA1 MCF7GSE15244 150596520 150597545 1025 18775
H3ac HepG2E 150578888 150579869 981 1121
H3ac HepG2E 150581901 150582227 326 3807
H3ac HepG2E 150585336 150585823 487 7322
H3ac HepG2E 150586800 150587582 782 8934
PolII HeLaGSE12783 150585147 150590734 5587 9683
RARA MCF7GSE15244 150586800 150588583 1783 9434
RARG MCF7GSE15244 150586800 150588182 1382 9234
RARG MCF7GSE15244 150596416 150597545 1129 18723
TFAP2C MCF7GSE21234 150586507 150587866 1359 8929
TFAP2C MCF7GSE21234 150595029 150595646 617 17080
USF2 HepG2E 150581901 150582257 356 3822
USF2 HepG2E 150587019 150587729 710 9117
hScc1 BcellGSE12603 150593791 150594044 253 15660
hScc1 CdLSGSE12603 150593715 150594044 329 15622
hScc1 G2GSE9613 150593860 150594044 184 15695
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 150553045 150553210 165 16367
CTCF CD4SISSRdata 150553045 150553210 165 16367
CTCF G2GSE9613 150552796 150553311 515 16441
FOXA1 MCF7GSE15244 150552831 150553491 660 16334
FOXA1 MCF7GSE15244 150553885 150554365 480 15370
Oct1 H2O2-HelaGSE14283 150566909 150566957 48 2562
Oct1 HelaGSE14283 150559709 150559840 131 9720
Oct1 HelaGSE14283 150566909 150566956 47 2562
RARA MCF7GSE15244 150552758 150553201 443 16515
RARA MCF7GSE15244 150556632 150556998 366 12680
RARG MCF7GSE15244 150552947 150553458 511 16292
RARG MCF7GSE15244 150553923 150554429 506 15319
hScc1 CdLSGSE12603 150552865 150553491 626 16317
hScc1 G2GSE9613 150552831 150553311 480 16424
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 150577910 150578243 333 0
FOXA1 MCF7GSE15244 150569326 150569943 617 0
FOXA1 MCF7GSE15244 150571640 150572224 584 0
FoxA1 MCF7MACSdata 150569725 150569865 140 0
H3ac HepG2E 150570443 150570904 461 0
H3ac HepG2E 150575732 150576472 740 0
H3ac HepG2E 150576756 150578603 1847 0
PolII HeLaGSE12783 150566279 150580267 13988 0
Rb GrowingGSE19898 150578024 150578403 379 0
TAF HelaGSE8489 150575872 150578888 3016 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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