AutismKB 2.0

Annotation Detail for TRPM1


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Basic Information Top
Gene Symbol:TRPM1 ( CSNB1C,LTRPC1,MLSN1 )
Gene Full Name: transient receptor potential cation channel, subfamily M, member 1
Band: 15q13.3
Quick LinksEntrez ID:4308; OMIM: 603576; Uniprot ID:TRPM1_HUMAN; ENSEMBL ID: ENSG00000134160; HGNC ID: 7146
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
423Phosphothreonine.
424Phosphothreonine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002420
  • Location:chr15 29080843-29181215
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 29103679 29104586 907 0
CTCF G2GSE9613 29142588 29142916 328 0
ER Fulvestrant-MCF7GSE14664 29154289 29154322 33 0
KLF4 hESGSE17917 29094163 29094379 216 0
NFkBII GM12892GSE19485 29156211 29157491 1280 0
Oct1 HelaGSE14283 29120470 29120503 33 0
Oct1 HelaGSE14283 29180276 29180306 30 0
Oct4 ESGSE20650 29158900 29159452 552 0
Oct4 hESGSE17917 29159125 29159360 235 0
Oct4 hESGSE21916 29158713 29159569 856 0
P300 T30-glioblastomaGSE21026 29103551 29104362 811 0
P300 T30-glioblastomaGSE21026 29170811 29171411 600 0
TFAP2C MCF7GSE21234 29113665 29114034 369 0
TFAP2C MCF7GSE21234 29145294 29145737 443 0
VDR GM10861-stimGSE22484 29130595 29131559 964 0
hScc1 BcellGSE12603 29160252 29160474 222 0
hScc1 BcellGSE12603 29178670 29178987 317 0
p63 keratinocytesGSE17611 29089322 29090020 698 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-211 hsa-mir-211 15 21072171
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
8582 mRNA chr15 29167810 29169552 1742 mRNA TRPM1 chr15 29080844 29181216 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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