Annotation Detail for C6orf138

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Basic Information Top

Gene Symbol:	C6orf138 ( FLJ41841,dJ402H5.2 )
Gene Full Name:	chromosome 6 open reading frame 138
Band:	6p12.3
Quick Links	Entrez ID:442213; OMIM: NA; Uniprot ID:CF138_HUMAN; ENSEMBL ID: ENSG00000178729; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
762	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_207499
Location:chr6 47975303-48144347
strand:-

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:15 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	48153922	48153955	33	9591
FoxA1	MCF7	MACSdata	48155958	48156201	243	11732
H3K27me3	colorectal	cancer	48145397	48146004	607	1353
Nanog	hES	GSE18292	48149200	48149700	500	5103
Oct4	hES	GSE21916	48149327	48149677	350	5155

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	48143915	48144672	757	0
ER	E2-MCF7	GSE14664	48139422	48139476	54	0
ER	Fulvestrant-MCF7	GSE14664	47978022	47978120	98	0
ER	Fulvestrant-MCF7	GSE14664	47978152	47978187	35	0
ER	Fulvestrant-MCF7	GSE14664	48012705	48012759	54	0
H3K27me3	colorectal	cancer	48143055	48144108	1053	0
Nanog	hES	GSE18292	48137049	48137504	455	0
Oct1	H2O2-Hela	GSE14283	48019657	48019701	44	0
Oct1	H2O2-Hela	GSE14283	48020495	48020522	27	0
Oct1	H2O2-Hela	GSE14283	48065496	48065531	35	0
Oct1	H2O2-Hela	GSE14283	48107734	48107783	49	0
Oct1	Hela	GSE14283	48061233	48061303	70	0
Oct1	Hela	GSE14283	48065498	48065531	33	0
RNAII	Tamoxifen-MCF7	GSE14664	48050807	48050854	47	0
RNAII	Tamoxifen-MCF7	GSE14664	48050896	48050969	73	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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