Annotation Detail for MSH3

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Basic Information Top

Gene Symbol:	MSH3 ( DUP,MGC163306,MGC163308,MRP1 )
Gene Full Name:	mutS homolog 3 (E. coli)
Band:	5q14.1
Quick Links	Entrez ID:4437; OMIM: 600887; Uniprot ID:MSH3_HUMAN; ENSEMBL ID: ENSG00000113318; HGNC ID: 7326
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
201	Phosphoserine.
1068	Phosphotyrosine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	80216637	80217053	416	8457
TFAP2C	MCF7	GSE21234	80209426	80210032	606	1341

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	80003856	80004090	234
CTCF	CD4	GSE12889	80018424	80018692	268
CTCF	CD4	SISSRdata	80003856	80004090	234
CTCF	CD4	SISSRdata	80018424	80018692	268
CTCF	Hela	GSE12889	80043629	80043808	179
CTCF	G2	GSE9613	80003609	80004077	468
CTCF	G2	GSE9613	80043529	80043777	248
GABP	k562	GSE8489	80044425	80044598	173
NRSF	Jurkat	GSE13047	80185085	80185424	339
NRSF	mAb	Jurkat	80187031	80187375	344
NRSF-mono	Jurkat	QuESTdata	80185024	80185355	331
Nanog	ES	GSE20650	80152262	80152611	349
Nanog	hES	GSE18292	80018271	80018640	369
Nanog	hES	GSE18292	80079656	80080038	382
Oct1	H2O2-Hela	GSE14283	79998056	79998091	35
Oct1	H2O2-Hela	GSE14283	80047451	80047481	30
Oct1	Hela	GSE14283	80003812	80003858	46
Oct1	Hela	GSE14283	80118415	80118451	36
Sox2	hES	GSE18292	80018448	80018625	177
Sox2	hES	GSE18292	80079386	80080041	655
TFAP2C	MCF7	GSE21234	79999597	80000258	661
TFAP2C	MCF7	GSE21234	80068329	80068671	342
hScc1	Bcell	GSE12603	80003609	80004077	468
hScc1	Bcell	GSE12603	80043529	80043913	384
hScc1	CdLS	GSE12603	80003609	80004138	529
hScc1	CdLS	GSE12603	80043529	80043838	309
p130	shRbSenescent	GSE19898	80203302	80203585	283
p63	keratinocytes	GSE17611	80154151	80154784	633

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-134	hsa-mir-134	14	20371173
hsa-miR-379	hsa-mir-379	14	20371173
hsa-miR-379*	hsa-mir-379	14	20371173
hsa-miR-495	hsa-mir-495	14	20371173

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
21174	mRNA	MSH3	chr5	79986294	80208389	217	mRNA	DHFR	chr5	79957803	79986572	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018