AutismKB 2.0

Annotation Detail for MSH5


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Basic Information Top
Gene Symbol:MSH5 ( DKFZp434C1615,G7,MGC2939,MUTSH5,NG23 )
Gene Full Name: mutS homolog 5 (E. coli)
Band: 6p21.33
Quick LinksEntrez ID:4439; OMIM: 603382; Uniprot ID:MSH5_HUMAN; ENSEMBL ID: ENSG00000204410; HGNC ID: 7328
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
11Phosphothreonine(CDK)HMM predict
11Phosphothreonine(CDC2)HMM predict
21O-linkedHMM predict
22O-linkedHMM predict
26O-linkedHMM predict
26Phosphoserine(CDC2)HMM predict
109N-linkedHMM predict
151N-linkedHMM predict
179Phosphothreonine(PKC)HMM predict
227Phosphotyrosine(Syk)HMM predict
227Phosphotyrosine(Jak)HMM predict
228Phosphoserine(CK1)HMM predict
261S-palmitoylHMM predict
278Phosphothreonine(PKA)HMM predict
326Phosphoserine(PKG)HMM predict
542SulfotyrosineHMM predict
544Phosphotyrosine(Jak)HMM predict
576N-linkedHMM predict
594N-linkedHMM predict
640Phosphoserine(CK1)HMM predict
661N-linkedHMM predict
742Phosphotyrosine(Jak)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002441
  • Location:chr6 31815752-31838428
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 31814179 31814411 232 1458
E2F4 G0GSE7516 31815075 31816248 1173 91
FOXA1 MCF7GSE15244 31813616 31814564 948 1663
FOXA1 MCF7GSE15244 31815111 31815691 580 352
FoxA1 MCF7MACSdata 31814093 31814457 364 1478
H3ac HepG2E 31814216 31815170 954 1060
LIN9 G0GSE7516 31815039 31816288 1249 89
LIN9 SGSE7516 31815206 31816288 1082 6
Rb GrowingGSE19898 31815385 31815633 248 244
Rb SenescentGSE19898 31815297 31816194 897 7
TAF k562GSE8489 31813224 31814924 1700 1679
TFAP2C MCF7GSE21234 31813886 31814822 936 1399
USF2 HepG2E 31813224 31815240 2016 1521
p130 QuiescentGSE19898 31815383 31816059 676 32
p130 SenescentGSE19898 31814961 31816155 1194 195
p130 shRbQuiescentGSE19898 31815126 31816353 1227 13
p130 shRbSenescentGSE19898 31815134 31816041 907 165
p130 G0GSE7516 31815075 31816288 1213 71
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 31815727 31816225 498 0
CTCF G2GSE9613 31837062 31837439 377 0
FOXA1 MCF7GSE15244 31825392 31825826 434 0
H3ac HepG2E 31815862 31816288 426 0
H3ac HepG2E 31816864 31817051 187 0
H3ac HepG2E 31824397 31824643 246 0
H3ac HepG2E 31834054 31834387 333 0
PHF8 293TGSE20725 31815408 31816316 908 0
RARA MCF7GSE15244 31825316 31826004 688 0
Rb GrowingGSE19898 31815679 31816021 342 0
Rb GrowingGSE19898 31816052 31816164 112 0
Rb QuiescentGSE19898 31815429 31816255 826 0
Rb shRbQuiescentGSE19898 31815711 31815994 283 0
Rb shRbSenescenceGSE19898 31815465 31816155 690 0
hScc1 BcellGSE12603 31835247 31835540 293 0
p130 SGSE7516 31815240 31816288 1048 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22430 mRNA MSH5 chr6 31815755 31840601 331 EST chr6 31840065 31841344Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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