AutismKB 2.0

Annotation Detail for MSX1


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Basic Information Top
Gene Symbol:MSX1 ( HOX7,HYD1,STHAG1 )
Gene Full Name: msh homeobox 1
Band: 4p16.2
Quick LinksEntrez ID:4487; OMIM: 142983; Uniprot ID:MSX1_HUMAN; ENSEMBL ID: ENSG00000163132; HGNC ID: 7391
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
28O-linkedHMM predict
28O-linkedHMM predict
104Phosphoserine(CK1)HMM predict
105O-linkedHMM predict
105PhosphoserineHMM predict
105Phosphoserine(MAPK)HMM predict
105Phosphoserine(CDC2)HMM predict
130Phosphoserine(CDC2)HMM predict
142Phosphoserine(CDC2)HMM predict
146Phosphoserine(CDC2)HMM predict
154Phosphoserine(PKA)HMM predict
154Phosphoserine(IKK)HMM predict
171Phosphothreonine(MAPK)HMM predict
204Phosphoserine(CK1)HMM predict
204Phosphoserine(IKK)HMM predict
264O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002448
  • Location:chr4 4912299-4916558
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 4894979 4895527 548 17047
CTCF G2GSE9613 4899855 4900363 508 12191
CTCF G2GSE9613 4903451 4904708 1257 8220
CTCF G2GSE9613 4905069 4906149 1080 6691
CTCF G2GSE9613 4909033 4909361 328 3103
Fos K562GSE19551 4911909 4912528 619 81
H3K27me3 colorectalcancer 4907294 4909456 2162 3925
H3K27me3 colorectalcancer 4909958 4911784 1826 1429
TFAP2C MCF7GSE21234 4901218 4902159 941 10611
TFAP2C MCF7GSE21234 4908750 4909237 487 3306
hScc1 BcellGSE12603 4899823 4900065 242 12356
hScc1 BcellGSE12603 4905106 4906149 1043 6672
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 4917698 4918379 681 1480
CTCF G2GSE9613 4918722 4919294 572 2450
CTCF G2GSE9613 4919728 4921286 1558 3949
CTCF G2GSE9613 4922825 4923814 989 6761
CTCF G2GSE9613 4924145 4924531 386 7780
CTCF G2GSE9613 4925301 4925479 178 8832
CTCF G2GSE9613 4925850 4926514 664 9624
CTCF G2GSE9613 4927711 4928066 355 11330
CTCF G2GSE9613 4930482 4930683 201 14024
hScc1 BcellGSE12603 4917806 4918840 1034 1765
hScc1 BcellGSE12603 4919888 4920593 705 3682
hScc1 BcellGSE12603 4922825 4923498 673 6603
hScc1 BcellGSE12603 4924332 4924531 199 7873
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 4912160 4913086 926 0
CTCF G2GSE9613 4915709 4915920 211 0
H3K27me3 colorectalcancer 4914626 4914945 319 0
PHF8 293TGSE20725 4911776 4913055 1279 0
hScc1 BcellGSE12603 4912160 4913051 891 0
hScc1 BcellGSE12603 4915661 4915920 259 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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