AutismKB 2.0

Annotation Detail for NCAM1


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Basic Information Top
Gene Symbol:NCAM1 ( CD56,MSK39,NCAM )
Gene Full Name: neural cell adhesion molecule 1
Band: 11q23.2
Quick LinksEntrez ID:4684; OMIM: 116930; Uniprot ID:NCAM1_HUMAN; ENSEMBL ID: ENSG00000149294; HGNC ID: 7656
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
222N-linked (GlcNAc...) (Potential).
315N-linked (GlcNAc...) (Potential).
347N-linked (GlcNAc...) (Potential).
433N-linked (GlcNAc...) (Potential).
459N-linked (GlcNAc...).
488N-linked (GlcNAc...) (Potential).
784Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000615
  • Location:chr11 112337204-112654366
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 112665614 112665847 233 11364
CTCF CD4SISSRdata 112665614 112665847 233 11364
CTCF HelaGSE12889 112665482 112665852 370 11301
CTCF JurkatGSE12889 112665570 112665809 239 11323
FOXA1 DLD1GSE12801 112669776 112670241 465 15642
FOXA1 MCF7GSE15244 112664186 112664519 333 9986
NFkBII GM18526GSE19485 112665221 112666283 1062 11386
Rb QuiescentGSE19898 112657193 112657325 132 2893
hScc1 BcellGSE12603 112665449 112665928 479 11322
hScc1 CdLSGSE12603 112665449 112665928 479 11322
hScc1 G2GSE9613 112665449 112665928 479 11322
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TFAP2C MCF7GSE21234 112650638 112651179 541 0
hScc1 BcellGSE12603 112644285 112644988 703 0
hScc1 BcellGSE12603 112648910 112649562 652 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-122 hsa-mir-122 18 19296470
hsa-miR-122* hsa-mir-122 18 19296470
hsa-miR-124 hsa-mir-124-1 8 21131276
hsa-miR-124 hsa-mir-124-2 8 21131276
hsa-miR-124 hsa-mir-124-3 20 21131276
hsa-miR-196a hsa-mir-196a-1 17 19085952
hsa-miR-196a hsa-mir-196a-2 12 19085952
hsa-miR-210 hsa-mir-210 11 19826008
hsa-miR-375 hsa-mir-375 2 20584986
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
5200 mRNA NCAM1 chr11 112583788 112653781 1873 mRNA chr11 112643782 112645655 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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