Annotation Detail for NEUROD1
Basic Information Top
| Gene Symbol: | NEUROD1 ( BETA2,BHF-1,MODY6,NEUROD,bHLHa3 ) |
|---|---|
| Gene Full Name: | neurogenic differentiation 1 |
| Band: | 2q31.3 |
| Quick Links | Entrez ID:4760; OMIM: 601724; Uniprot ID:NDF1_HUMAN; ENSEMBL ID: ENSG00000162992; HGNC ID: 7762 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 93 | Nuclear localization signal (Potential). | |
| 162 | Phosphoserine (By similarity). | |
| 259 | Phosphoserine (By similarity). | |
| 266 | Phosphoserine (By similarity). | |
| 274 | Phosphoserine (By similarity). | |
| 335 | Phosphoserine; by CaMK2 (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 274 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 335 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 6 | Phosphoserine(CAMK2) | HMM predict |
| 28 | Phosphoserine(CK1) | HMM predict |
| 29 | Phosphoserine(CK2) | HMM predict |
| 29 | Phosphoserine(ATM) | HMM predict |
| 52 | Phosphoserine(CK1) | HMM predict |
| 92 | Phosphothreonine(PKC) | HMM predict |
| 92 | Phosphothreonine(PKA) | HMM predict |
| 167 | Phosphoserine(IKK) | HMM predict |
| 211 | O-linked | HMM predict |
| 219 | Phosphotyrosine(Abl) | HMM predict |
| 228 | Phosphoserine(MAPK) | HMM predict |
| 231 | Phosphotyrosine(SRC) | HMM predict |
| 231 | Phosphotyrosine(Abl) | HMM predict |
| 233 | Phosphothreonine(PKC) | HMM predict |
| 274 | Phosphoserine(MAPK) | HMM predict |
| 274 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_002500
- Location:chr2 182249439-182253498
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 182256588 | 182257478 | 890 | 3535 |
| H3K27me3 | colorectal | cancer | 182251054 | 182256397 | 5343 | 227 |
| H3K27me3 | colorectal | cancer | 182257369 | 182258754 | 1385 | 4563 |
| NRSF | mAb | Jurkat | 182254069 | 182255058 | 989 | 1065 |
| NRSF | mAb | Jurkat | 182257177 | 182260204 | 3027 | 5192 |
| NRSF-mono | Jurkat | QuESTdata | 182257987 | 182258654 | 667 | 4822 |
| NRSF-poly | Jurkat | QuESTdata | 182258103 | 182258675 | 572 | 4891 |
| TFAP2C | MCF7 | GSE21234 | 182256291 | 182256686 | 395 | 2990 |
| TFAP2C | MCF7 | GSE21234 | 182258051 | 182258620 | 569 | 4837 |
| hScc1 | Bcell | GSE12603 | 182256561 | 182257035 | 474 | 3300 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| NRSF | mAb | Jurkat | 182244720 | 182244974 | 254 | 4593 |
| Nanog | hES | GSE18292 | 182240190 | 182240503 | 313 | 9093 |
| Sox2 | hES | GSE18292 | 182240269 | 182240502 | 233 | 9054 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| NRSF | Jurkat | GSE13047 | 182250661 | 182251926 | 1265 | 0 |
| NRSF | mAb | Jurkat | 182247934 | 182253792 | 5858 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 182250658 | 182251860 | 1202 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 182250605 | 182251962 | 1357 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-124 | hsa-mir-124-1 | 8 | 21131276 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 21131276 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 21131276 |
| hsa-miR-130a | hsa-mir-130a | 11 | 21067317 |
| hsa-miR-130a* | hsa-mir-130a | 11 | 21067317 |
| hsa-miR-135a | hsa-mir-135a-1 | 3 | 20194722 |
| hsa-miR-135a | hsa-mir-135a-2 | 12 | 20194722 |
| hsa-miR-15a | hsa-mir-15a | 13 | 17936263 |
| hsa-miR-15a* | hsa-mir-15a | 13 | 17936263 |
| hsa-miR-15b | hsa-mir-15b | 3 | 17936263 |
| hsa-miR-15b* | hsa-mir-15b | 3 | 17936263 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 17936263 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 17936263 |
| hsa-miR-17 | hsa-mir-17 | 13 | 21067317 |
| hsa-miR-17* | hsa-mir-17 | 13 | 21067317 |
| hsa-miR-190 | hsa-mir-190 | 15 | 20554861 |
| hsa-miR-195 | hsa-mir-195 | 17 | 17936263 |
| hsa-miR-195* | hsa-mir-195 | 17 | 17936263 |
| hsa-miR-199a-5p | hsa-mir-199a-1 | 19 | 20194722 |
| hsa-miR-199a-5p | hsa-mir-199a-2 | 1 | 20194722 |
| hsa-miR-9 | hsa-mir-9-1 | 1 | 18842901 |
| hsa-miR-9 | hsa-mir-9-2 | 5 | 18842901 |
| hsa-miR-9 | hsa-mir-9-3 | 15 | 18842901 |
| hsa-miR-92a | hsa-mir-92a-1 | 13 | 21067317 |
| hsa-miR-92a | hsa-mir-92a-2 | X | 21067317 |
| No data |
Cis-Nats regulation