Annotation Detail for NFIL3

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Basic Information Top

Gene Symbol:	NFIL3 ( E4BP4,IL3BP1,NF-IL3A,NFIL3A )
Gene Full Name:	nuclear factor, interleukin 3 regulated
Band:	9q22.31
Quick Links	Entrez ID:4783; OMIM: 605327; Uniprot ID:NFIL3_HUMAN; ENSEMBL ID: ENSG00000165030; HGNC ID: 7787
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:3 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
286	Phosphoserine (By similarity).
301	Phosphoserine.
353	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_005384
Location:chr9 93211149-93225964
strand:-

Upstream the gene:11 results
Downstream the gene:2 results
Inside the gene:11 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	93235351	93235947	596	9685
CTCF	CD4	GSE12889	93228256	93228546	290	2437
CTCF	CD4	GSE12889	93235328	93235542	214	9471
CTCF	CD4	SISSRdata	93228256	93228546	290	2437
CTCF	CD4	SISSRdata	93235328	93235542	214	9471
FoxA1	MCF7	MACSdata	93235384	93235605	221	9530
H3K4me3	colorectal	cancer	93225909	93226160	251	70
P300	T30-glioblastoma	GSE21026	93235101	93235866	765	9519
hScc1	Bcell	GSE12603	93228003	93228543	540	2309
hScc1	G2	GSE9613	93225268	93227172	1904	256
hScc1	G2	GSE9613	93228099	93228936	837	2553

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FoxA1	MCF7	MACSdata	93209110	93209263	153	1963
P300	T30-glioblastoma	GSE21026	93197054	93198568	1514	13339

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	93221222	93221744	522	0
H3K4me3	colorectal	cancer	93224072	93225310	1238	0
H3ac	HepG2	E	93221554	93222784	1230	0
H3ac	HepG2	E	93223931	93225411	1480	0
Nanog	ES	GSE20650	93214204	93214300	96	0
RARA	MCF7	GSE15244	93221307	93222244	937	0
hScc1	Bcell	GSE12603	93223374	93223788	414	0
hScc1	Bcell	GSE12603	93225310	93226468	1158	0
p130	shRbQuiescent	GSE19898	93221349	93221829	480	0
p130	shRbQuiescent	GSE19898	93225038	93225491	453	0
p130	G0	GSE7516	93216055	93216273	218	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
26719	EST		chr9	91251780	91252207	427	mRNA	NFIL3	chr9	91250883	91265699	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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