AutismKB 2.0

Annotation Detail for NID1


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Basic Information Top
Gene Symbol:NID1 ( NID )
Gene Full Name: nidogen 1
Band: 1q42.3
Quick LinksEntrez ID:4811; OMIM: 131390; Uniprot ID:NID1_HUMAN; ENSEMBL ID: ENSG00000116962; HGNC ID: 7821
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
289Sulfotyrosine (Potential).
296Sulfotyrosine (Potential).
704Cell attachment site.
1137N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
289Sulfotyrosine (Potential).Swiss-Prot 53.0
296Sulfotyrosine (Potential).Swiss-Prot 53.0
1137N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
75Phosphotyrosine(Jak)HMM predict
113Phosphothreonine(CK2)HMM predict
127Phosphoserine(ATM)HMM predict
189Phosphoserine(CK1)HMM predict
245Phosphoserine(CK1)HMM predict
271O-linkedHMM predict
289Phosphotyrosine(INSR)HMM predict
289SulfotyrosineHMM predict
296Phosphotyrosine(Syk)HMM predict
296Phosphotyrosine(INSR)HMM predict
296SulfotyrosineHMM predict
326Phosphotyrosine(INSR)HMM predict
327Phosphoserine(IKK)HMM predict
327Phosphoserine(CK1)HMM predict
333Phosphoserine(CDK)HMM predict
333Phosphoserine(CDC2)HMM predict
339Phosphothreonine(PKC)HMM predict
447Phosphoserine(ATM)HMM predict
461Phosphotyrosine(INSR)HMM predict
475O-linkedHMM predict
582O-linkedHMM predict
584Phosphoserine(CDC2)HMM predict
584O-linkedHMM predict
586O-linkedHMM predict
589Phosphotyrosine(SRC)HMM predict
589SulfotyrosineHMM predict
600Phosphoserine(CDC2)HMM predict
719Phosphoserine(IKK)HMM predict
786O-linkedHMM predict
967PhosphothreonineHMM predict
1137N-linkedHMM predict
1233ArginineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002508
  • Location:chr1 234205763-234295103
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 234313679 234314590 911 19031
H3K27me3 colorectalcancer 234295589 234297154 1565 1268
H3K4me3 colorectalcancer 234295729 234296092 363 807
H3ac HepG2E 234295729 234296419 690 971
NFkBII GM12878GSE19485 234295488 234297873 2385 1577
p63 keratinocytesGSE17611 234313460 234314537 1077 18895
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 234201723 234202009 286 3898
CTCF CD4SISSRdata 234201723 234202009 286 3898
CTCF G2GSE9613 234201617 234202173 556 3869
Myc K562GSE19551 234201722 234201932 210 3937
Oct4 hESGSE17917 234201638 234202184 546 3853
P300 T0-glioblastomaGSE21026 234185479 234186361 882 19844
Rb GrowingGSE19898 234201615 234201875 260 4019
Rb SenescentGSE19898 234201733 234202044 311 3875
TAFII hESGSE17917 234201719 234202184 465 3812
hScc1 BcellGSE12603 234201322 234202173 851 4016
hScc1 CdLSGSE12603 234201286 234202173 887 4034
hScc1 G2GSE9613 234201240 234202173 933 4057
p130 QuiescentGSE19898 234201689 234202305 616 3767
p130 SenescentGSE19898 234201628 234202305 677 3797
p130 SenescentGSE19898 234202355 234202551 196 3311
p130 shRbQuiescentGSE19898 234201698 234202486 788 3672
p130 shRbSenescentGSE19898 234201724 234202206 482 3799
p63 keratinocytesGSE17611 234190462 234191223 761 14921
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 234234251 234234386 135 0
CTCF CD4SISSRdata 234234251 234234386 135 0
CTCF G2GSE9613 234223102 234223493 391 0
CTCF G2GSE9613 234226109 234226283 174 0
CTCF G2GSE9613 234228842 234228988 146 0
CTCF G2GSE9613 234231893 234232106 213 0
CTCF G2GSE9613 234241614 234241897 283 0
CTCF G2GSE9613 234276291 234276613 322 0
CTCF G2GSE9613 234293914 234295238 1324 0
Fos K562GSE19551 234229238 234229769 531 0
NFkBII GM12878GSE19485 234228417 234230245 1828 0
Nanog hESGSE18292 234288110 234288539 429 0
Rb SenescentGSE19898 234293897 234294294 397 0
Rb shRbSenescenceGSE19898 234294056 234294393 337 0
Sox2 hESGSE18292 234288055 234288585 530 0
TFAP2C MCF7GSE21234 234260065 234260557 492 0
USF1 HepG2E 234236724 234236910 186 0
USF1 HepG2E 234269335 234270342 1007 0
USF1 HepG2E 234271434 234272120 686 0
USF2 HepG2E 234269370 234270020 650 0
hScc1 BcellGSE12603 234223243 234223708 465 0
hScc1 BcellGSE12603 234268071 234268281 210 0
hScc1 BcellGSE12603 234293914 234295696 1782 0
hScc1 CdLSGSE12603 234228954 234229654 700 0
p130 SenescentGSE19898 234248588 234248992 404 0
p130 shRbQuiescentGSE19898 234293790 234294380 590 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-124 hsa-mir-124-1 8 18042700
hsa-miR-124 hsa-mir-124-2 8 18042700
hsa-miR-124 hsa-mir-124-3 20 18042700
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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