AutismKB 2.0

Annotation Detail for YBX1


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Basic Information Top
Gene Symbol:YBX1 ( BP-8,CSDA2,CSDB,DBPB,MDR-NF1,MGC104858,MGC110976,MGC117250,NSEP-1,NSEP1,YB-1,YB1 )
Gene Full Name: Y box binding protein 1
Band: 1p34.2
Quick LinksEntrez ID:4904; OMIM: 154030; Uniprot ID:YBOX1_HUMAN; ENSEMBL ID: ENSG00000065978; HGNC ID: 8014
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylserine.
102Phosphoserine; by PKB/AKT1.
162Phosphotyrosine.
165Phosphoserine.
167Phosphoserine.
174Phosphoserine.
176Phosphoserine.
301N6-acetyllysine.
304N6-acetyllysine.
313Phosphoserine.
314Phosphoserine.
Location(AA) Modifications Resource
101PhosphoserinePhospho.ELM 6.0
102Phosphoserine (by PKB/AKT1).Swiss-Prot 53.0
161PhosphotyrosinePhospho.ELM 6.0
162Phosphotyrosine.Swiss-Prot 53.0
164PhosphoserinePhospho.ELM 6.0
165Phosphoserine (By similarity).Swiss-Prot 53.0
173PhosphoserinePhospho.ELM 6.0
174Phosphoserine.Swiss-Prot 53.0
175PhosphoserinePhospho.ELM 6.0
176Phosphoserine.Swiss-Prot 53.0
312PhosphoserinePhospho.ELM 6.0
313PhosphoserinePhospho.ELM 6.0
314Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
32Phosphoserine(IKK)HMM predict
36O-linkedHMM predict
44O-linkedHMM predict
78N-linkedHMM predict
124N-linkedHMM predict
136Phosphoserine(PKC)HMM predict
162Phosphotyrosine(Syk)HMM predict
174Phosphoserine(CK2)HMM predict
241Phosphotyrosine(Jak)HMM predict
312N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004559
  • Location:chr1 42920652-42940603
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 42919386 42920785 1399 567
H3K4me2 HCT116GSE10453 42919242 42920013 771 1025
H3K4me3 colorectalcancer 42919643 42920157 514 753
H3ac HepG2E 42918204 42920568 2364 1267
NFkBII GM15510GSE19485 42919136 42922138 3002 16
Oct1 HelaGSE14283 42918736 42918767 31 1901
PHF8 293TGSE20725 42919887 42921348 1461 35
Rb GrowingGSE19898 42920396 42920651 255 129
Rb SenescentGSE19898 42920157 42920766 609 191
TAF k562GSE8489 42917792 42918840 1048 2337
TAF k562GSE8489 42919169 42920343 1174 897
USF1 HepG2E 42918309 42920935 2626 1031
USF2 HepG2E 42919207 42920709 1502 695
p130 QuiescentGSE19898 42920234 42920732 498 170
p130 SenescentGSE19898 42919903 42920762 859 320
p130 shRbQuiescentGSE19898 42920176 42920826 650 152
p130 shRbSenescentGSE19898 42919836 42920766 930 352
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 42921939 42922697 758 0
H3ac HepG2E 42921505 42923020 1515 0
H3ac HepG2E 42923386 42924260 874 0
H3ac HepG2E 42924894 42925221 327 0
H3ac HepG2E 42930398 42931385 987 0
KLF4 hESGSE17917 42920844 42921361 517 0
PHF8 HeLaGSE20725 42919811 42921778 1967 0
PolII HeLaGSE12783 42919008 42923027 4019 0
TAF HelaGSE8489 42921677 42922215 538 0
TAF k562GSE8489 42921574 42924224 2650 0
hScc1 BcellGSE12603 42921295 42921574 279 0
hScc1 BcellGSE12603 42929283 42929418 135 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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