AutismKB 2.0

Annotation Detail for CNTN3


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Basic Information Top
Gene Symbol:CNTN3 ( BIG-1,KIAA1496,PANG,PCS )
Gene Full Name: contactin 3 (plasmacytoma associated)
Band: 3p12.3
Quick LinksEntrez ID:5067; OMIM: 601325; Uniprot ID:CNTN3_HUMAN; ENSEMBL ID: ENSG00000113805; HGNC ID: 2173
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
65N-linked (GlcNAc...) (Potential).
193N-linked (GlcNAc...) (Potential).
375N-linked (GlcNAc...) (Potential).
468N-linked (GlcNAc...) (Potential).
489N-linked (GlcNAc...).
765N-linked (GlcNAc...) (Potential).
860N-linked (GlcNAc...).
895N-linked (GlcNAc...) (Potential).
913N-linked (GlcNAc...) (Potential).
931N-linked (GlcNAc...).
956N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
65N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
193N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
375N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
468N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
489N-linked (GlcNAc...).Swiss-Prot 53.0
765N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
860N-linked (GlcNAc...).Swiss-Prot 53.0
895N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
913N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
931N-linked (GlcNAc...).Swiss-Prot 53.0
956N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1002GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
55N-linkedHMM predict
65N-linkedHMM predict
67Phosphoserine(CK2)HMM predict
175Phosphoserine(PKG)HMM predict
182Phosphotyrosine(INSR)HMM predict
193N-linkedHMM predict
199O-linkedHMM predict
210Phosphoserine(CDK)HMM predict
210Phosphoserine(CDC2)HMM predict
295Phosphotyrosine(INSR)HMM predict
334Phosphoserine(CK1)HMM predict
375N-linkedHMM predict
436Phosphoserine(MAPK)HMM predict
468N-linkedHMM predict
477Phosphotyrosine(INSR)HMM predict
489N-linkedHMM predict
575Phosphotyrosine(Jak)HMM predict
575Phosphotyrosine(INSR)HMM predict
587Phosphoserine(CK2)HMM predict
597Phosphoserine(CDC2)HMM predict
624N-linkedHMM predict
695Phosphothreonine(PKC)HMM predict
705O-linkedHMM predict
755Phosphoserine(CDC2)HMM predict
758Phosphothreonine(MAPK)HMM predict
765N-linkedHMM predict
767Phosphoserine(PKG)HMM predict
790Phosphoserine(CDC2)HMM predict
803O-linkedHMM predict
803O-linkedHMM predict
807Phosphoserine(ATM)HMM predict
813Phosphoserine(CK1)HMM predict
815Phosphoserine(CK1)HMM predict
815Phosphoserine(CK2)HMM predict
817Phosphoserine(CK1)HMM predict
825Phosphothreonine(PKC)HMM predict
853Phosphoserine(CK1)HMM predict
860N-linkedHMM predict
891O-linkedHMM predict
895N-linkedHMM predict
897O-linkedHMM predict
901Phosphothreonine(PKA)HMM predict
901Phosphothreonine(MAPK)HMM predict
901Phosphothreonine(CDK)HMM predict
904O-linkedHMM predict
904Phosphoserine(ATM)HMM predict
913N-linkedHMM predict
931N-linkedHMM predict
956N-linkedHMM predict
996Phosphoserine(PKB)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020872
  • Location:chr3 74394411-74653032
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 74475795 74476289 494 0
CTCF G2GSE9613 74399570 74399943 373 0
FoxA1 MCF7MACSdata 74540846 74541243 397 0
Nanog ESGSE20650 74427292 74427699 407 0
Nanog hESGSE18292 74485026 74485178 152 0
Oct1 H2O2-HelaGSE14283 74404935 74404964 29 0
Oct1 H2O2-HelaGSE14283 74494446 74494484 38 0
Oct1 H2O2-HelaGSE14283 74559423 74559452 29 0
Oct1 H2O2-HelaGSE14283 74647964 74647992 28 0
Oct1 HelaGSE14283 74404935 74404981 46 0
Oct1 HelaGSE14283 74494450 74494492 42 0
P300 T30-glioblastomaGSE21026 74475768 74476489 721 0
Rb GrowingGSE19898 74595317 74595601 284 0
Rb shRbSenescenceGSE19898 74594632 74594874 242 0
TFAP2C MCF7GSE21234 74525328 74525646 318 0
hScc1 G2GSE9613 74399498 74399943 445 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 21378162
hsa-let-7a hsa-let-7a-2 11 21378162
hsa-let-7a hsa-let-7a-3 22 21378162
hsa-let-7a hsa-let-7a-1 9 21378162
hsa-let-7a hsa-let-7a-2 11 21378162
hsa-let-7a hsa-let-7a-3 22 21378162
hsa-let-7a* hsa-let-7a-1 9 21378162
hsa-let-7a* hsa-let-7a-3 22 21378162
hsa-let-7a* hsa-let-7a-1 9 21378162
hsa-let-7a* hsa-let-7a-3 22 21378162
hsa-let-7b hsa-let-7b 22 21378162
hsa-let-7b hsa-let-7b 22 21378162
hsa-let-7b* hsa-let-7b 22 21378162
hsa-let-7b* hsa-let-7b 22 21378162
hsa-let-7c hsa-let-7c 21 21378162
hsa-let-7c hsa-let-7c 21 21378162
hsa-let-7c* hsa-let-7c 21 21378162
hsa-let-7c* hsa-let-7c 21 21378162
hsa-let-7d hsa-let-7d 9 21378162
hsa-let-7d hsa-let-7d 9 21378162
hsa-let-7d* hsa-let-7d 9 21378162
hsa-let-7d* hsa-let-7d 9 21378162
hsa-let-7e hsa-let-7e 19 21378162
hsa-let-7e hsa-let-7e 19 21378162
hsa-let-7e* hsa-let-7e 19 21378162
hsa-let-7e* hsa-let-7e 19 21378162
hsa-let-7f hsa-let-7f-1 9 21378162
hsa-let-7f hsa-let-7f-2 X 21378162
hsa-let-7f hsa-let-7f-1 9 21378162
hsa-let-7f hsa-let-7f-2 X 21378162
hsa-let-7f-1* hsa-let-7f-1 9 21378162
hsa-let-7f-1* hsa-let-7f-1 9 21378162
hsa-let-7f-2* hsa-let-7f-2 X 21378162
hsa-let-7f-2* hsa-let-7f-2 X 21378162
hsa-let-7g hsa-let-7g 3 21378162
hsa-let-7g hsa-let-7g 3 21378162
hsa-let-7g* hsa-let-7g 3 21378162
hsa-let-7g* hsa-let-7g 3 21378162
hsa-let-7i hsa-let-7i 12 21378162
hsa-let-7i hsa-let-7i 12 21378162
hsa-let-7i* hsa-let-7i 12 21378162
hsa-let-7i* hsa-let-7i 12 21378162
hsa-miR-106b hsa-mir-106b 7 18728182
hsa-miR-106b hsa-mir-106b 7 18728182
hsa-miR-106b* hsa-mir-106b 7 18728182
hsa-miR-106b* hsa-mir-106b 7 18728182
hsa-miR-150 hsa-mir-150 19 18348159
hsa-miR-150 hsa-mir-150 19 18348159
hsa-miR-150* hsa-mir-150 19 18348159
hsa-miR-150* hsa-mir-150 19 18348159
hsa-miR-155 hsa-mir-155 21 18348159
hsa-miR-155 hsa-mir-155 21 18348159
hsa-miR-155* hsa-mir-155 21 18348159
hsa-miR-155* hsa-mir-155 21 18348159
hsa-miR-15a hsa-mir-15a 13 18348159
hsa-miR-15a hsa-mir-15a 13 18348159
hsa-miR-15a* hsa-mir-15a 13 18348159
hsa-miR-15a* hsa-mir-15a 13 18348159
hsa-miR-16 hsa-mir-16-1 13 18348159
hsa-miR-16 hsa-mir-16-2 3 18348159
hsa-miR-16 hsa-mir-16-1 13 18348159
hsa-miR-16 hsa-mir-16-2 3 18348159
hsa-miR-17 hsa-mir-17 13 18728182
hsa-miR-17 hsa-mir-17 13 18728182
hsa-miR-17* hsa-mir-17 13 18728182
hsa-miR-17* hsa-mir-17 13 18728182
hsa-miR-181a hsa-mir-181a-2 9 18728182
hsa-miR-181a hsa-mir-181a-1 1 18728182
hsa-miR-181a hsa-mir-181a-2 9 18728182
hsa-miR-181a hsa-mir-181a-1 1 18728182
hsa-miR-181b hsa-mir-181b-1 1 18728182
hsa-miR-181b hsa-mir-181b-2 9 18728182
hsa-miR-181b hsa-mir-181b-1 1 18728182
hsa-miR-181b hsa-mir-181b-2 9 18728182
hsa-miR-19a hsa-mir-19a 13 18728182
hsa-miR-19a hsa-mir-19a 13 18728182
hsa-miR-19a* hsa-mir-19a 13 18728182
hsa-miR-19a* hsa-mir-19a 13 18728182
hsa-miR-19b hsa-mir-19b-1 13 18728182
hsa-miR-19b hsa-mir-19b-2 X 18728182
hsa-miR-19b hsa-mir-19b-1 13 18728182
hsa-miR-19b hsa-mir-19b-2 X 18728182
hsa-miR-21 hsa-mir-21 17 18728182
hsa-miR-21 hsa-mir-21 17 18348159
hsa-miR-21 hsa-mir-21 17 18728182
hsa-miR-21 hsa-mir-21 17 18348159
hsa-miR-21* hsa-mir-21 17 18728182
hsa-miR-21* hsa-mir-21 17 18348159
hsa-miR-21* hsa-mir-21 17 18728182
hsa-miR-21* hsa-mir-21 17 18348159
hsa-miR-25 hsa-mir-25 7 18728182
hsa-miR-25 hsa-mir-25 7 18728182
hsa-miR-25* hsa-mir-25 7 18728182
hsa-miR-25* hsa-mir-25 7 18728182
hsa-miR-32 hsa-mir-32 9 18728182
hsa-miR-32 hsa-mir-32 9 18728182
hsa-miR-32* hsa-mir-32 9 18728182
hsa-miR-32* hsa-mir-32 9 18728182
hsa-miR-93 hsa-mir-93 7 18728182
hsa-miR-93 hsa-mir-93 7 18728182
hsa-miR-93* hsa-mir-93 7 18728182
hsa-miR-93* hsa-mir-93 7 18728182
hsa-miR-98 hsa-mir-98 X 21378162
hsa-miR-98 hsa-mir-98 X 21378162
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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