AutismKB 2.0

Annotation Detail for REG3A


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Basic Information Top
Gene Symbol:REG3A ( HIP,PAP,PAP-H,PAP1,PBCGF,REG-III,REG3 )
Gene Full Name: regenerating islet-derived 3 alpha
Band: 2p12
Quick LinksEntrez ID:5068; OMIM: 167805; Uniprot ID:REG3A_HUMAN; ENSEMBL ID: ENSG00000172016; HGNC ID: 8601
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
22Phosphoserine(ATM)HMM predict
86Phosphoserine(IKK)HMM predict
136N-linkedHMM predict
138Phosphoserine(PKB)HMM predict
141Phosphoserine(CK1)HMM predict
142Phosphoserine(CDK)HMM predict
168ProlineHMM predict
174ThreonineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002580
  • Location:chr2 79237640-79240386
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 79249038 79249632 594 8949
CBP T30-glioblastomaGSE21026 79249447 79249640 193 9157
P300 T0-glioblastomaGSE21026 79249422 79249633 211 9141
No data
No data
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-30a hsa-mir-30a 6 21134262
hsa-miR-30a* hsa-mir-30a 6 21134262
hsa-miR-30b hsa-mir-30b 8 21134262
hsa-miR-30b* hsa-mir-30b 8 21134262
hsa-miR-30c hsa-mir-30c-2 6 21134262
hsa-miR-30c hsa-mir-30c-1 1 21134262
hsa-miR-30c-1* hsa-mir-30c-1 1 21134262
hsa-miR-30c-2* hsa-mir-30c-2 6 21134262
hsa-miR-30d hsa-mir-30d 8 21134262
hsa-miR-30d* hsa-mir-30d 8 21134262
hsa-miR-30e hsa-mir-30e 1 21134262
hsa-miR-30e* hsa-mir-30e 1 21134262
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
14526 EST chr2 79297154 79324331 90 mRNA REG3A chr2 79295787 79298534Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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