AutismKB 2.0

Annotation Detail for PCDH9


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Basic Information Top
Gene Symbol:PCDH9 ( - )
Gene Full Name: protocadherin 9
Band: 13q21.32
Quick LinksEntrez ID:5101; OMIM: 603581; Uniprot ID:PCDH9_HUMAN; ENSEMBL ID: ENSG00000184226; HGNC ID: 8661
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
48N-linked (GlcNAc...) (Potential).
148N-linked (GlcNAc...) (Potential).
306N-linked (GlcNAc...) (Potential).
307N-linked (GlcNAc...) (Potential).
347N-linked (GlcNAc...) (Potential).
368N-linked (GlcNAc...) (Potential).
450N-linked (GlcNAc...) (Potential).
511N-linked (GlcNAc...) (Potential).
630N-linked (GlcNAc...) (Potential).
681N-linked (GlcNAc...) (Potential).
734N-linked (GlcNAc...) (Potential).
754N-linked (GlcNAc...) (Potential).
775N-linked (GlcNAc...) (Potential).
780N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
48N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
148N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
306N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
307N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
347N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
368N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
450N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
511N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
630N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
681N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
734N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
754N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
775N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
780N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
56O-linkedHMM predict
79Phosphoserine(PKG)HMM predict
81Phosphoserine(CK2)HMM predict
144Phosphoserine(CDC2)HMM predict
148N-linkedHMM predict
154N-linkedHMM predict
165O-linkedHMM predict
234O-linkedHMM predict
306N-linkedHMM predict
307N-linkedHMM predict
338Phosphothreonine(MAPK)HMM predict
338Phosphothreonine(CDK)HMM predict
338Phosphothreonine(CDC2)HMM predict
347N-linkedHMM predict
352N-linkedHMM predict
368N-linkedHMM predict
450N-linkedHMM predict
511N-linkedHMM predict
547N-linkedHMM predict
608Phosphothreonine(PKC)HMM predict
657O-linkedHMM predict
677Phosphoserine(CDC2)HMM predict
734N-linkedHMM predict
754N-linkedHMM predict
775N-linkedHMM predict
780N-linkedHMM predict
804Phosphoserine(ATM)HMM predict
807PhosphotyrosineHMM predict
807Phosphotyrosine(Syk)HMM predict
812Phosphotyrosine(Syk)HMM predict
876Phosphoserine(CDC2)HMM predict
890Phosphoserine(CK2)HMM predict
901N-linkedHMM predict
927O-linkedHMM predict
927O-linkedHMM predict
932Phosphoserine(CDK)HMM predict
932Phosphoserine(MAPK)HMM predict
943Phosphoserine(CDK)HMM predict
943Phosphoserine(CDC2)HMM predict
954Phosphothreonine(CDC2)HMM predict
954Phosphothreonine(MAPK)HMM predict
994Phosphoserine(CK2)HMM predict
1018Phosphothreonine(PKA)HMM predict
1028Phosphoserine(IKK)HMM predict
1060Phosphotyrosine(Syk)HMM predict
1060Phosphotyrosine(EGFR)HMM predict
1060SulfotyrosineHMM predict
1122Phosphoserine(MAPK)HMM predict
1122Phosphoserine(CDC2)HMM predict
1164Phosphotyrosine(INSR)HMM predict
1173N-linkedHMM predict
1197Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020403
  • Location:chr13 65774967-66702463
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 66702597 66703310 713 490
Fos K562GSE19551 66702328 66702755 427 78
P300 T30-glioblastomaGSE21026 66702141 66703090 949 152
hScc1 G2GSE9613 66702597 66703346 749 508
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 65761011 65761191 180 13867
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 66696429 66696618 189 0
CTCF CD4SISSRdata 66696429 66696618 189 0
CTCF G2GSE9613 65976019 65976164 145 0
CTCF G2GSE9613 66015723 66016083 360 0
CTCF G2GSE9613 66161265 66161500 235 0
CTCF G2GSE9613 66696307 66696727 420 0
ER E2-MCF7GSE14664 66338870 66338902 32 0
ER E2-MCF7GSE14664 66364036 66364069 33 0
ER E2-MCF7GSE14664 66608452 66608486 34 0
ER Fulvestrant-MCF7GSE14664 66592493 66592546 53 0
Fos K562GSE19551 66406080 66406461 381 0
Fos K562GSE19551 66656412 66656692 280 0
FoxA1 MCF7MACSdata 66530287 66530514 227 0
GABP k562GSE8489 66410116 66410332 216 0
H3K27me3 colorectalcancer 66700642 66701118 476 0
H3K4me3 colorectalcancer 66701569 66702643 1074 0
Jun K562GSE19551 66615966 66616158 192 0
KLF4 hESGSE17917 65820018 65820222 204 0
Myc K562GSE19551 66466475 66466662 187 0
Myc K562GSE19551 66696334 66696730 396 0
Nanog ESGSE20650 66053709 66054116 407 0
Nanog ESGSE20650 66358025 66358561 536 0
Nanog ESGSE20650 66377108 66377503 395 0
Nanog ESGSE20650 66659132 66659512 380 0
Nanog hESGSE18292 66377109 66377546 437 0
Oct1 H2O2-HelaGSE14283 66025074 66025104 30 0
Oct1 H2O2-HelaGSE14283 66364035 66364067 32 0
Oct1 HelaGSE14283 66025076 66025113 37 0
Oct1 HelaGSE14283 66068653 66068690 37 0
Oct4 ESGSE20650 66232852 66233201 349 0
P300 T0-glioblastomaGSE21026 66107398 66108150 752 0
P300 T30-glioblastomaGSE21026 66107513 66108102 589 0
P300 T30-glioblastomaGSE21026 66129184 66129940 756 0
P300 T30-glioblastomaGSE21026 66591734 66592142 408 0
PHF8 Hs68minusFBSGSE20725 66696347 66696877 530 0
TAF k562GSE8489 66585095 66585662 567 0
hScc1 G2GSE9613 66161196 66161971 775 0
hScc1 G2GSE9613 66696229 66696799 570 0
p63 keratinocytesGSE17611 66398999 66399899 900 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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