Annotation Detail for SAR1B

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Basic Information Top

Gene Symbol:	SAR1B ( ANDD,CMRD,GTBPB,SARA2 )
Gene Full Name:	SAR1 homolog B (S. cerevisiae)
Band:	5q31.1
Quick Links	Entrez ID:51128; OMIM: 607690; Uniprot ID:SAR1B_HUMAN; ENSEMBL ID: ENSG00000152700; HGNC ID: 10535
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:2 results

No data

Location(AA)	Modification	Resource
143	Phosphoserine(CK1)	HMM predict
186	Tyrosine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001033503
Location:chr5 133970018-133996425
strand:-

Upstream the gene:14 results
Downstream the gene:2 results
Inside the gene:16 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	133996315	133996627	312	46
FOXA1	MCF7	GSE15244	134000864	134001073	209	4543
FoxA1	MCF7	MACSdata	134000887	134001087	200	4562
NFkBII	GM15510	GSE19485	133995830	133997089	1259	34
Oct4	ES	GSE20650	133996318	133996632	314	50
Rb	Growing	GSE19898	133996377	133996657	280	92
Rb	Senescent	GSE19898	133996220	133996638	418	4
Rb	shRbQuiescent	GSE19898	133996401	133996566	165	58
Rb	shRbSenescence	GSE19898	133996440	133996576	136	83
TAFII	hES	GSE17917	133996275	133996707	432	66
TFAP2C	MCF7	GSE21234	134000613	134001337	724	4550
hScc1	Bcell	GSE12603	133996254	133996627	373	15
p130	Quiescent	GSE19898	133996336	133996687	351	86
p130	shRbQuiescent	GSE19898	133996196	133996661	465	3

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	133965813	133965870	57	4177
Rb	Growing	GSE19898	133966788	133966944	156	3153

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	133995811	133996771	960	0
H3K4me3	colorectal	cancer	133995828	133996315	487	0
H3ac	HepG2	E	133995828	133996351	523	0
NFkBII	GM18526	GSE19485	133995776	133997039	1263	0
Nanog	hES	GSE18292	133977824	133978243	419	0
Oct1	Hela	GSE14283	133973535	133973570	35	0
Oct1	Hela	GSE14283	133973909	133973986	77	0
Oct4	hES	GSE17917	133996151	133996683	532	0
P300	T30-glioblastoma	GSE21026	133995676	133996885	1209	0
PHF8	HeLa	GSE20725	133995772	133997038	1266	0
PHF8	Hs68minusFBS	GSE20725	133995814	133996687	873	0
Rb	Quiescent	GSE19898	133996149	133996621	472	0
VDR	GM10861-stim	GSE22484	133995657	133996999	1342	0
hScc1	CdLS	GSE12603	133995937	133996627	690	0
p130	Senescent	GSE19898	133996031	133996701	670	0
p130	shRbSenescent	GSE19898	133995876	133996690	814	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
21479	mRNA	SEC24A	chr5	134012412	134057286	350	mRNA	SARA2	chr5	133957913	134012860	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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