Annotation Detail for C3orf18
Basic Information Top
| Gene Symbol: | C3orf18 ( G20 ) |
|---|---|
| Gene Full Name: | chromosome 3 open reading frame 18 |
| Band: | 3p21.31 |
| Quick Links | Entrez ID:51161; OMIM: NA; Uniprot ID:CC018_HUMAN; ENSEMBL ID: ENSG00000088543; HGNC ID: 24837 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 19 | O-linked | HMM predict |
| 32 | O-linked | HMM predict |
| 32 | O-linked | HMM predict |
| 34 | O-linked | HMM predict |
| 35 | O-linked | HMM predict |
| 36 | O-linked | HMM predict |
| 38 | Phosphoserine(CDC2) | HMM predict |
| 42 | O-linked | HMM predict |
| 45 | N-linked | HMM predict |
- RefSeq ID: NM_016210
- Location:chr3 50570466-50580185
- strand:-
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 50554819 | 50555259 | 440 | 15428 |
| CTCF | CD4 | GSE12889 | 50562586 | 50562806 | 220 | 7771 |
| CTCF | CD4 | SISSRdata | 50554819 | 50555259 | 440 | 15428 |
| CTCF | CD4 | SISSRdata | 50562586 | 50562806 | 220 | 7771 |
| CTCF | Hela | GSE12889 | 50554961 | 50555246 | 285 | 15363 |
| CTCF | Jurkat | GSE12889 | 50554957 | 50555217 | 260 | 15380 |
| CTCF | Jurkat | GSE12889 | 50562544 | 50562896 | 352 | 7747 |
| CTCF | G2 | GSE9613 | 50551726 | 50552189 | 463 | 18509 |
| CTCF | G2 | GSE9613 | 50552622 | 50552751 | 129 | 17780 |
| CTCF | G2 | GSE9613 | 50554007 | 50555460 | 1453 | 15733 |
| CTCF | G2 | GSE9613 | 50559146 | 50560079 | 933 | 10854 |
| CTCF | G2 | GSE9613 | 50561945 | 50563437 | 1492 | 7776 |
| CTCF | G2 | GSE9613 | 50565043 | 50565863 | 820 | 5014 |
| CTCF | G2 | GSE9613 | 50566754 | 50567117 | 363 | 3531 |
| CTCF | G2 | GSE9613 | 50569254 | 50569552 | 298 | 1064 |
| Gata2 | K562 | GSE18868 | 50551781 | 50552714 | 933 | 18219 |
| TFAP2C | MCF7 | GSE21234 | 50562431 | 50562915 | 484 | 7794 |
| hScc1 | Bcell | GSE12603 | 50554891 | 50555214 | 323 | 15414 |
| hScc1 | Bcell | GSE12603 | 50562136 | 50562799 | 663 | 7999 |
| hScc1 | Bcell | GSE12603 | 50566938 | 50567315 | 377 | 3340 |
| hScc1 | CdLS | GSE12603 | 50562308 | 50562900 | 592 | 7863 |
| hScc1 | G2 | GSE9613 | 50561945 | 50563401 | 1456 | 7794 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 50570843 | 50571165 | 322 | 0 |
| CTCF | G2 | GSE9613 | 50573470 | 50573871 | 401 | 0 |
| CTCF | G2 | GSE9613 | 50579864 | 50580249 | 385 | 0 |
| Fos | K562 | GSE19551 | 50579825 | 50580522 | 697 | 0 |
| hScc1 | Bcell | GSE12603 | 50577828 | 50578189 | 361 | 0 |
| hScc1 | Bcell | GSE12603 | 50579788 | 50580081 | 293 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18121 | mRNA | HEMK1 | chr3 | 50581912 | 50597426 | 61 | mRNA | C3orf18 | chr3 | 50570466 | 50583426 | Sense/Antisense (SA) pairs |