AutismKB 2.0

Annotation Detail for NAGPA


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Basic Information Top
Gene Symbol:NAGPA ( APAA,UCE )
Gene Full Name: N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Band: 16p13.3
Quick LinksEntrez ID:51172; OMIM: 607985; Uniprot ID:NAGPA_HUMAN; ENSEMBL ID: ENSG00000103174; HGNC ID: 17378
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
208N-linked (GlcNAc...) (Potential).
214N-linked (GlcNAc...) (Potential).
296N-linked (GlcNAc...) (Potential).
366N-linked (GlcNAc...) (Potential).
388N-linked (GlcNAc...) (Potential).
420N-linked (GlcNAc...) (Potential).
491Tyrosine-based internalization motif.
515NPF internalization motif.
Location(AA) Modifications Resource
208N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
214N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
296N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
366N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
388N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
420N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
70Phosphothreonine(MAPK)HMM predict
105Phosphoserine(CAMK2)HMM predict
105Phosphoserine(PKC)HMM predict
122Phosphothreonine(PKC)HMM predict
122Phosphothreonine(PKA)HMM predict
160Phosphoserine(CK1)HMM predict
160Phosphoserine(PKG)HMM predict
160Phosphoserine(PKA)HMM predict
161Phosphoserine(PKG)HMM predict
177Phosphothreonine(PKA)HMM predict
184Phosphoserine(CK2)HMM predict
208N-linkedHMM predict
212Phosphotyrosine(INSR)HMM predict
214N-linkedHMM predict
296N-linkedHMM predict
319Phosphoserine(PKB)HMM predict
366N-linkedHMM predict
388N-linkedHMM predict
420N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016256
  • Location:chr16 5014845-5023936
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 5023811 5024354 543 146
KLF4 hESGSE17917 5026830 5027151 321 3054
USF1 HepG2E 5026255 5026894 639 2638
p130 SenescentGSE19898 5023546 5024402 856 38
p130 shRbQuiescentGSE19898 5023689 5024277 588 47
p130 shRbSenescentGSE19898 5023694 5024231 537 26
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 4998673 4998892 219 16063
Fos K562GSE19551 5005267 5005863 596 9281
Oct1 H2O2-HelaGSE14283 4996241 4996270 29 18590
Oct1 H2O2-HelaGSE14283 4998141 4998170 29 16690
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 5014749 5015798 1049 0
CTCF G2GSE9613 5023643 5023974 331 0
ETS1 JurkatGSE17954 5023310 5024393 1083 0
H3K4me3 colorectalcancer 5022735 5023571 836 0
H3ac HepG2E 5022703 5023100 397 0
HIF1 NormHepG2 5023371 5023997 626 0
Oct1 HelaGSE14283 5018679 5018717 38 0
P300 T0-glioblastomaGSE21026 5023593 5024201 608 0
P300 T30-glioblastomaGSE21026 5023334 5024201 867 0
PHF8 Hs68plusFBSGSE20725 5023001 5024551 1550 0
USF1 HepG2E 5020152 5020895 743 0
USF1 HepG2E 5021450 5022294 844 0
USF1 HepG2E 5022703 5023329 626 0
USF1 HepG2E 5023686 5023997 311 0
USF2 HepG2E 5022703 5023100 397 0
USF2 HepG2E 5023761 5023997 236 0
p130 QuiescentGSE19898 5023629 5024094 465 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9566 mRNA chr16 5023703 5034001 113 mRNA NAGPA chr16 5014847 5023916Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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