Annotation Detail for CHMP1A

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Basic Information Top

Gene Symbol:	CHMP1A ( CHMP1,KIAA0047,PCOLN3,PRSM1,Vps46A )
Gene Full Name:	chromatin modifying protein 1A
Band:	16q24.3
Quick Links	Entrez ID:5119; OMIM: 164010; Uniprot ID:CHM1A_HUMAN; ENSEMBL ID: ENSG00000131165; HGNC ID: 8740
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:8 results

Location(AA)	Modification
1	N-acetylmethionine.
195	MIT-interacting motif.

Location(AA)	Modification	Resource
26	Phosphoserine(CK2)	HMM predict
134	Phosphoserine(CK1)	HMM predict
134	Phosphoserine(IKK)	HMM predict
137	O-linked	HMM predict
140	O-linked	HMM predict
141	Phosphothreonine(MAPK)	HMM predict
141	Phosphothreonine(CDK)	HMM predict
182	Phosphoserine(CK1)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_002768
Location:chr16 88238345-88251629
strand:-

Upstream the gene:0 results
Downstream the gene:1 results
Inside the gene:8 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	Jurkat	GSE12889	88235200	88235483	283	3004

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	88239010	88239313	303	0
H3K4me3	colorectal	cancer	88251253	88251564	311	0
NRSF	pAb	Jurkat	88243161	88243449	288	0
TAF	Hela	GSE8489	88248883	88249167	284	0
hScc1	Bcell	GSE12603	88240710	88240997	287	0
hScc1	Bcell	GSE12603	88242134	88242489	355	0
hScc1	Bcell	GSE12603	88243784	88243941	157	0
hScc1	Bcell	GSE12603	88246219	88246692	473	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
10412	mRNA	C16orf55	chr16	88251710	88265176	34	mRNA	PCOLN3	chr16	88238345	88251754	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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